Matthew Parks
Matthew Parks
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Cited by
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
SCK Straub, M Parks, K Weitemier, M Fishbein, RC Cronn, A Liston
American journal of botany 99 (2), 349-364, 2012
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
M Parks, R Cronn, A Liston
BMC biology 7 (1), 1-17, 2009
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
R Cronn, A Liston, M Parks, DS Gernandt, R Shen, T Mockler
Nucleic acids research 36 (19), e122-e122, 2008
Targeted enrichment strategies for next‐generation plant biology
R Cronn, BJ Knaus, A Liston, PJ Maughan, M Parks, JV Syring, J Udall
American journal of botany 99 (2), 291-311, 2012
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
SCK Straub, M Fishbein, T Livshultz, Z Foster, M Parks, K Weitemier, ...
BMC genomics 12 (1), 1-22, 2011
Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)
M Parks, R Cronn, A Liston
BMC Evolutionary Biology 12, 1-17, 2012
Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
JB Whittall, J Syring, M Parks, J Buenrostro, C Dick, A Liston, R Cronn
Molecular Ecology 19, 100-114, 2010
Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing
A Alexander, D Steel, B Slikas, K Hoekzema, C Carraher, M Parks, ...
Genome biology and evolution 5 (1), 113-129, 2013
Comparison of nuclear, plastid, and mitochondrial phylogenies and the origin of wild octoploid strawberry species
R Govindarajulu, M Parks, JA Tennessen, A Liston, TL Ashman
American Journal of Botany 102 (4), 544-554, 2015
Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta)
MB Parks, T Nakov, EC Ruck, NJ Wickett, AJ Alverson
American journal of botany 105 (3), 330-347, 2018
Signal, uncertainty, and conflict in phylogenomic data for a diverse lineage of microbial eukaryotes (Diatoms, Bacillariophyta)
MB Parks, NJ Wickett, AJ Alverson
Molecular Biology and Evolution 35 (1), 80-93, 2018
Bioclimatic, ecological, and phenotypic intermediacy and high genetic admixture in a natural hybrid of octoploid strawberries
I Salamone, R Govindarajulu, S Falk, M Parks, A Liston, TL Ashman
American Journal of Botany 100 (5), 939-950, 2013
Ancient population genomics and the study of evolution
M Parks, S Subramanian, C Baroni, MC Salvatore, G Zhang, CD Millar, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015
Impacts of low coverage depths and post-mortem DNA damage on variant calling: a simulation study
M Parks, D Lambert
BMC genomics 16 (1), 1-12, 2015
Use of the chloroplast gene ycf1 for the genetic differentiation of pine nuts obtained from consumers experiencing dysgeusia
SM Handy, MB Parks, JR Deeds, A Liston, LS De Jager, S Luccioli, ...
Journal of agricultural and food chemistry 59 (20), 10995-11002, 2011
Phylogenetics of extant and fossil Pinaceae: methods for increasing topological stability
DS Gernandt, G Holman, C Campbell, M Parks, S Mathews, LA Raubeson, ...
Botany 94 (9), 863-884, 2016
Recurrent loss, horizontal transfer, and the obscure origins of mitochondrial introns in diatoms (Bacillariophyta)
WX Guillory, A Onyshchenko, EC Ruck, M Parks, T Nakov, NJ Wickett, ...
Genome biology and evolution 10 (6), 1504-1515, 2018
The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer
G Banavar, O Ogundijo, R Toma, S Rajagopal, YK Lim, K Tang, ...
NPJ Genomic Medicine 6 (1), 105, 2021
Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family‐wide utility
M Parks, A Liston, R Cronn
American Journal of Botany 98 (7), e185-e188, 2011
The study of stream litter accumulation as a model for cross-disciplinary, transformative, affordable, and scalable undergraduate research experiences in STEM
MB Parks, EP Hendryx, AT Taylor
Interdisciplinary Journal of Environmental and Science Education 17 (3), e2245, 2021
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