Claudine Chaouiya
Claudine Chaouiya
Aix-Marseille University (France) & Instituto Gulbenkian de Ciência (Portugal)
Verified email at igc.gulbenkian.pt - Homepage
TitleCited byYear
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
A Fauré, A Naldi, C Chaouiya, D Thieffry
Bioinformatics 22 (14), e124-e131, 2006
4922006
Petri net modelling of biological networks
C Chaouiya
Briefings in bioinformatics 8 (4), 210-219, 2007
3952007
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance
Ö Sahin, H Fröhlich, C Löbke, U Korf, S Burmester, M Majety, J Mattern, ...
BMC systems biology 3 (1), 1, 2009
1742009
Logical modelling of regulatory networks with GINsim 2.3
A Naldi, D Berenguier, A Fauré, F Lopez, D Thieffry, C Chaouiya
Biosystems 97 (2), 134-139, 2009
1512009
GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks
AG Gonzalez, A Naldi, L Sanchez, D Thieffry, C Chaouiya
Biosystems 84 (2), 91-100, 2006
1512006
Diversity and plasticity of Th cell types predicted from regulatory network modelling
A Naldi, J Carneiro, C Chaouiya, D Thieffry
PLoS computational biology 6 (9), e1000912, 2010
1282010
Decision diagrams for the representation and analysis of logical models of genetic networks
A Naldi, D Thieffry, C Chaouiya
International Conference on Computational Methods in Systems Biology, 233-247, 2007
1242007
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli
E Simao, E Remy, D Thieffry, C Chaouiya
Bioinformatics 21 (suppl_2), ii190-ii196, 2005
1042005
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7 (1), 116, 2013
992013
Dynamically consistent reduction of logical regulatory graphs
A Naldi, E Remy, D Thieffry, C Chaouiya
Theoretical Computer Science 412 (21), 2207-2218, 2011
982011
Petri net modelling of biological regulatory networks
C Chaouiya, E Remy, D Thieffry
Journal of Discrete Algorithms 6 (2), 165-177, 2008
982008
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
922013
Qualitative analysis of regulatory graphs: a computational tool based on a discrete formal framework
C Chaouiya, E Remy, B Mossé, D Thieffry
Positive Systems, 119-126, 2003
872003
Logical modelling of gene regulatory networks with GINsim
C Chaouiya, A Naldi, D Thieffry
Bacterial Molecular Networks, 463-479, 2012
842012
Qualitative modelling of genetic networks: From logical regulatory graphs to standard petri nets
C Chaouiya, E Remy, P Ruet, D Thieffry
International Conference on Application and Theory of Petri Nets, 137-156, 2004
822004
A description of dynamical graphs associated to elementary regulatory circuits
E Remy, B Mossé, C Chaouiya, D Thieffry
Bioinformatics 19 (suppl_2), ii172-ii178, 2003
762003
Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module
L Sánchez, C Chaouiya, D Thieffry
International journal of developmental biology 52 (8), 1059-1075, 2002
702002
The extended kanban control system for production coordination of assembly manufacturing systems
C Chaouiya, G Liberopoulos, Y Dallery
Iie Transactions 32 (10), 999-1012, 2000
622000
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ...
Frontiers in genetics 7, 94, 2016
592016
A reduction of logical regulatory graphs preserving essential dynamical properties
A Naldi, E Remy, D Thieffry, C Chaouiya
International Conference on Computational Methods in Systems Biology, 266-280, 2009
582009
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Articles 1–20