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Xiuwei Zhang
Xiuwei Zhang
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Jahr
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
8462013
Simulating multiple faceted variability in single cell RNA sequencing
X Zhang, C Xu, N Yosef
Nature communications 10 (1), 1-16, 2019
3492019
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis
B Mahata, X Zhang, AA Kolodziejczyk, V Proserpio, L Haim-Vilmovsky, ...
Cell reports 7 (4), 1130-1142, 2014
1792014
Evolution of oligomeric state through allosteric pathways that mimic ligand binding
T Perica, Y Kondo, SP Tiwari, SH McLaughlin, KR Kemplen, X Zhang, ...
Science 346, 2014
622014
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ...
Genome Biology 17 (1), 103, 2016
572016
Evolution of protein structures and interactions from the perspective of residue contact networks
X Zhang, T Perica, SA Teichmann
Current opinion in structural biology 23 (6), 954-963, 2013
422013
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
RJ Miragaia, X Zhang, T Gomes, V Svensson, T Ilicic, J Henriksson, G Kar, ...
Scientific Reports 8, 685, 2018
342018
CD4+ and CD8+ cytotoxic T lymphocytes may induce mesenchymal cell apoptosis in IgG4-related disease
CA Perugino, N Kaneko, T Maehara, H Mattoo, J Kers, H Allard-Chamard, ...
Journal of Allergy and Clinical Immunology 147 (1), 368-382, 2021
272021
Refining transcriptional regulatory networks using network evolutionary models and gene histories
X Zhang, BME Moret
Algorithms for Molecular Biology 5 (1), 1, 2010
242010
Boosting the performance of inference algorithms for transcriptional regulatory networks using a phylogenetic approach
X Zhang, B Moret
Algorithms in Bioinformatics, 245-258, 2008
152008
Inference of high-resolution trajectories in single-cell RNA-seq data by using RNA velocity
Z Zhang, X Zhang
Cell reports methods 1 (6), 100095, 2021
102021
Refining regulatory networks through phylogenetic transfer of information
X Zhang, BME Moret
IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (4 …, 2012
102012
Bioinformatics Research and Applications
X Zhang, BME Moret
72011
Improving inference of transcriptional regulatory networks based on network evolutionary models
X Zhang, BME Moret
Proceedings of the 9th international conference on Algorithms in …, 2009
62009
SymSim: simulating multi-faceted variability in single cell RNA sequencing
X Zhang, C Xu, N Yosef
bioRxiv, 378646, 2019
52019
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks
X Zhang, B Moret
Bioinformatics Research and Applications, 344-357, 2011
52011
Analysis of coevolving gene families using mutually exclusive orthologous modules
X Zhang, M Kupiec, U Gophna, T Tuller
Genome biology and evolution 3, 413-423, 2011
52011
NEMo: An Evolutionary Model with Modularity for PPI Networks
M Ye, X Zhang, GC Racz, Q Jiang, BME Moret
IEEE Transactions on NanoBioscience 16 (2), 131-139, 2017
42017
Learning latent embedding of multi-modal single cell data and cross-modality relationship simultaneously
Z Zhang, C Yang, X Zhang
bioRxiv, 2021
32021
VeloSim: Simulating single cell gene-expression and RNA velocity
Z Zhang, X Zhang
bioRxiv, 2021.01. 11.426277, 2021
32021
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