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Jason Yim
Jason Yim
Verified email at csail.mit.edu - Homepage
Title
Cited by
Cited by
Year
Protein complex prediction with AlphaFold-Multimer
R Evans, M O’Neill, A Pritzel, N Antropova, A Senior, T Green, A Žídek, ...
biorxiv, 2021.10. 04.463034, 2021
16062021
De novo design of protein structure and function with RFdiffusion
JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, ...
Nature 620 (7976), 1089-1100, 2023
429*2023
Predicting conversion to wet age-related macular degeneration using deep learning
J Yim, R Chopra, T Spitz, J Winkens, A Obika, C Kelly, H Askham, M Lukic, ...
Nature Medicine 26 (6), 892-899, 2020
2252020
Diffusion probabilistic modeling of protein backbones in 3d for the motif-scaffolding problem
BL Trippe, J Yim, D Tischer, D Baker, T Broderick, R Barzilay, T Jaakkola
arXiv preprint arXiv:2206.04119, 2022
1562022
Se (3) diffusion model with application to protein backbone generation
J Yim, BL Trippe, V De Bortoli, E Mathieu, A Doucet, R Barzilay, ...
arXiv preprint arXiv:2302.02277, 2023
802023
Sparse projection oblique randomer forests
TM Tomita, J Browne, C Shen, J Chung, JL Patsolic, B Falk, CE Priebe, ...
Journal of machine learning research 21 (104), 1-39, 2020
46*2020
Protein complex prediction with AlphaFold-Multimer. bioRxiv, 2021.10. 04.463034
R Evans, M O’Neill, A Pritzel, N Antropova, A Senior, T Green, A Žídek, ...
232022
Fast protein backbone generation with SE (3) flow matching
J Yim, A Campbell, AYK Foong, M Gastegger, J Jiménez-Luna, S Lewis, ...
arXiv preprint arXiv:2310.05297, 2023
82023
Improving protein optimization with smoothed fitness landscapes
A Kirjner, J Yim, R Samusevich, S Bracha, TS Jaakkola, R Barzilay, ...
The Twelfth International Conference on Learning Representations, 2023
2*2023
Fast non-autoregressive inverse folding with discrete diffusion
JJ Yang, J Yim, R Barzilay, T Jaakkola
arXiv preprint arXiv:2312.02447, 2023
12023
Diffusion Probabilistic Modeling of Protein Backbones in 3D for the Motif-Scaffolding problem
J Yim
Massachusetts Institute of Technology, 2023
12023
Quantitative analysis of change in retinal tissues in neovascular age-related macular degeneration using artificial intelligence
R Chopra, G Moraes, DJ Fu, S Wagner, T Spitz, M Wilson, J Yim, ...
Investigative Ophthalmology & Visual Science 61 (7), 1152-1152, 2020
12020
PREDICTING PROTEIN AMINO ACID SEQUENCES USING GENERATIVE MODELS CONDITIONED ON PROTEIN STRUCTURE EMBEDDINGS
AW Senior, S Kohl, J Yim, RJ Bates, C Ionescu, CTC Nash, ...
US Patent App. 18/275,933, 2024
2024
Predicting disease progression from tissue images and tissue segmentation maps
J Yim, RK Chopra, T Spitz, JH Winkens, AAN Obika, T Back, JR Ledsam, ...
US Patent 11,935,232, 2024
2024
Diffusion models in protein structure and docking
J Yim, H Stärk, G Corso, B Jing, R Barzilay, TS Jaakkola
Wiley Interdisciplinary Reviews: Computational Molecular Science 14 (2), e1711, 2024
2024
Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design
A Campbell, J Yim, R Barzilay, T Rainforth, T Jaakkola
arXiv preprint arXiv:2402.04997, 2024
2024
Improved motif-scaffolding with SE (3) flow matching
J Yim, A Campbell, E Mathieu, AYK Foong, M Gastegger, J Jiménez-Luna, ...
arXiv preprint arXiv:2401.04082, 2024
2024
Automatic segmentation using artificial intelligence of baseline anatomical parameters of patients starting anti-VEGF injections for neovascular age-related macular degeneration
G Moraes, R Chopra, DJ Fu, S Wagner, T Spitz, M Wilson, J Yim, ...
Investigative Ophthalmology & Visual Science 61 (7), 1633-1633, 2020
2020
Integrating Generative and Experimental Platforms or Biomolecular Design
CH Liu, J Rector-Brooks, J Yim, S Yang, S Lisanza, FZ Li, P Chatterjee, ...
ICLR 2024 Workshops, 0
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Articles 1–19