Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 81 | 2021 |
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Journal of Molecular Graphics and Modelling 108, 108008, 2021 | 18 | 2021 |
On the need to introduce environmental characteristics in ab initio protein structure prediction using a coarse-grained UNRES force field I Roterman, A Sieradzan, K Stapor, P Fabian, P Wesołowski, L Konieczny Journal of Molecular Graphics and Modelling 114, 108166, 2022 | 14 | 2022 |
Extension of the Unres package for physics-based coarse-grained simulations of proteins and protein complexes to very large systems AK Sieradzan, CR Czaplewski, EA Lubecka, AG Lipska, AS Karczynska, ... Biophysical Journal 120 (3), 83a-84a, 2021 | 5 | 2021 |
CREST—A program for the exploration of low-energy molecular chemical space P Pracht, S Grimme, C Bannwarth, F Bohle, S Ehlert, G Feldmann, ... The Journal of Chemical Physics 160 (11), 2024 | 3 | 2024 |
Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations interacting with proteins AG Lipska, AM Antoniak, P Wesołowski, A Warszawski, SA Samsonov, ... Journal of Molecular Modeling 28 (7), 201, 2022 | 2 | 2022 |
Multilevel Framework for Analysis of Protein Folding Involving Disulfide Bond Formation PA Wesołowski, DJ Wales, P Pracht The Journal of Physical Chemistry B, 2024 | 1 | 2024 |
Energy landscapes for proteins described by the UNRES coarse-grained potential PA Wesołowski, AK Sieradzan, MJ Winnicki, JWR Morgan, DJ Wales Biophysical Chemistry 303, 107107, 2023 | 1 | 2023 |
Modeling structures of proteins with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, P Wesołowski, A Sieradzan, C Czaplewski, E Lubecka, ... Laboratory of Molecular Modeling, 2021 | | 2021 |
Modeling oligomeric protein structures with the coarse-grained UNRES force field in the CASP14 experiment P Wesołowski, A Antoniak, I Biskupek, K Bojarski, C Czaplewski, ... Intercollegiate Faculty of Biotechnology UG, 2021 | | 2021 |
Protein structure prediction in CASP14 with the coarse-grained UNRES model A Antoniak, I Biskupek, K Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Laboratory of Molecular Modeling, 2020 | | 2020 |
Template-assisted prediction of protein structures with the coarse-grained UNRES force field and replica-exchange molecular dynamics P Wesołowski, A Antoniak, M Kogut, M Maszota-Zieleniak, K Bojarski, ... Intercollegiate Faculty of Biotechnology UG, 2020 | | 2020 |