James C Phillips
James C Phillips
Senior Research Programmer, National Center for Supercomputing Applications, University of Illinois
Verified email at illinois.edu - Homepage
Cited by
Cited by
Scalable molecular dynamics with NAMD
JC Phillips, R Braun, W Wang, J Gumbart, E Tajkhorshid, E Villa, C Chipot, ...
Journal of computational chemistry 26 (16), 1781-1802, 2005
NAMD2: greater scalability for parallel molecular dynamics
L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ...
Journal of Computational Physics 151 (1), 283-312, 1999
GPU computing
JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips
Proceedings of the IEEE 96 (5), 879-899, 2008
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of computational chemistry 28 (16), 2618-2640, 2007
NAMD: Biomolecular simulation on thousands of processors
JC Phillips, G Zheng, S Kumar, LV Kalé
SC'02: Proceedings of the 2002 ACM/IEEE Conference on Supercomputing, 36-36, 2002
GPU clusters for high-performance computing
VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ...
2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009
Adapting a message-driven parallel application to GPU-accelerated clusters
JC Phillips, JE Stone, K Schulten
SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008
High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD
W Jiang, DJ Hardy, JC Phillips, AD MacKerell Jr, K Schulten, B Roux
The journal of physical chemistry letters 2 (2), 87-92, 2011
Predicting the structure of apolipoprotein AI in reconstituted high-density lipoprotein disks
JC Phillips, W Wriggers, Z Li, A Jonas, K Schulten
Biophysical Journal 73 (5), 2337-2346, 1997
Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins
AY Shih, IG Denisov, JC Phillips, SG Sligar, K Schulten
Biophysical journal 88 (1), 548-556, 2005
Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system
S Kumar, C Huang, G Zheng, E Bohm, A Bhatele, JC Phillips, H Yu, ...
IBM Journal of Research and Development 52 (1.2), 177-188, 2008
Molecular dynamics study of bacteriorhodopsin and the purple membrane
J Baudry, E Tajkhorshid, F Molnar, J Phillips, K Schulten
The Journal of Physical Chemistry B 105 (5), 905-918, 2001
Parallel generalized Born implicit solvent calculations with NAMD
DE Tanner, KY Chan, JC Phillips, K Schulten
Journal of chemical theory and computation 7 (11), 3635-3642, 2011
Overcoming scaling challenges in biomolecular simulations across multiple platforms
A Bhatele, S Kumar, C Mei, JC Phillips, G Zheng, LV Kale
2008 IEEE International Symposium on Parallel and Distributed Processing, 1-12, 2008
Quantum dynamics of the femtosecond photoisomerization of retinal in bacteriorhodopsin
M Ben-Nun, F Molnar, H Lu, JC Phillips, TJ Martínez, K Schulten
Faraday Discussions 110, 447-462, 1998
Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD
W Jiang, JC Phillips, L Huang, M Fajer, Y Meng, JC Gumbart, Y Luo, ...
Computer physics communications 185 (3), 908-916, 2014
Kale L and Schulten K
JC Phillips, R Braun, W Wang, J Gumbart, E Tajkhorshid, E Villa, C Chipot, ...
J. Comput. Chem. 2005, 26, 2005
Enabling and scaling biomolecular simulations of 100 million atoms on petascale machines with a multicore-optimized message-driven runtime
C Mei, Y Sun, G Zheng, EJ Bohm, LV Kale, JC Phillips, C Harrison
SC'11: Proceedings of 2011 International Conference for High Performance …, 2011
Protein response to external electric fields: relaxation, hysteresis, and echo
D Xu, JC Phillips, K Schulten
The Journal of Physical Chemistry 100 (29), 12108-12121, 1996
QwikMD—integrative molecular dynamics toolkit for novices and experts
JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ...
Scientific reports 6 (1), 1-14, 2016
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