Shannon McWeeney
Shannon McWeeney
Professor, Biostatistics and Bioinformatics, Oregon Health and Science University
Verified email at ohsu.edu - Homepage
Title
Cited by
Cited by
Year
Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions
S Impey, SR McCorkle, H Cha-Molstad, JM Dwyer, GS Yochum, JM Boss, ...
Cell 119 (7), 1041-1054, 2004
8162004
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
6112010
Oncogenic CSF3R mutations in chronic neutrophilic leukemia and atypical CML
JE Maxson, J Gotlib, DA Pollyea, AG Fleischman, A Agarwal, CA Eide, ...
New England Journal of Medicine 368 (19), 1781-1790, 2013
4282013
High-sensitivity detection of BCR-ABL kinase domain mutations in imatinib-naive patients: correlation with clonal cytogenetic evolution but not response to therapy
SG Willis, T Lange, S Demehri, S Otto, L Crossman, D Niederwieser, ...
Blood 106 (6), 2128-2137, 2005
3732005
MIFlowCyt: the minimum information about a Flow Cytometry Experiment
JA Lee, J Spidlen, K Boyce, J Cai, N Crosbie, M Dalphin, J Furlong, ...
Cytometry Part A: The journal of the International Society for Analytical …, 2008
3202008
Gene expression profiles of transcripts in amyloid precursor protein transgenic mice: up-regulation of mitochondrial metabolism and apoptotic genes is an early cellular change …
PH Reddy, S McWeeney, BS Park, M Manczak, RV Gutala, D Partovi, ...
Human molecular genetics 13 (12), 1225-1240, 2004
3192004
Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays
D Bottomly, NAR Walter, JE Hunter, P Darakjian, S Kawane, KJ Buck, ...
PloS one 6 (3), e17820, 2011
2272011
Clinical impact of COVID-19 on patients with cancer (CCC19): a cohort study
NM Kuderer, TK Choueiri, DP Shah, Y Shyr, SM Rubinstein, DR Rivera, ...
The Lancet, 2020
2122020
Functional genomic landscape of acute myeloid leukaemia
JW Tyner, CE Tognon, D Bottomly, B Wilmot, SE Kurtz, SL Savage, ...
Nature 562 (7728), 526-531, 2018
2062018
A viral microRNA down-regulates multiple cell cycle genes through mRNA 5′ UTRs
F Grey, R Tirabassi, H Meyers, G Wu, S McWeeney, L Hook, JA Nelson
PLoS Pathog 6 (6), e1000967, 2010
2062010
The Plasmodium genome database
JC Kissinger, BP Brunk, J Crabtree, MJ Fraunholz, B Gajria, AJ Milgram, ...
Nature 419 (6906), 490-492, 2002
1932002
Cancer stem cell tumor model reveals invasive morphology and increased phenotypical heterogeneity
A Sottoriva, JJC Verhoeff, T Borovski, SK McWeeney, L Naumov, ...
Cancer research 70 (1), 46-56, 2010
1872010
The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication
J Lu, T Tang, H Tang, J Huang, S Shi, CI Wu
Trends in Genetics 22 (3), 126-131, 2006
1842006
Modeling host genetic regulation of influenza pathogenesis in the collaborative cross
MT Ferris, DL Aylor, D Bottomly, AC Whitmore, LD Aicher, TA Bell, ...
PLoS Pathog 9 (2), e1003196, 2013
1572013
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)
A Bahl, B Brunk, RL Coppel, J Crabtree, SJ Diskin, MJ Fraunholz, ...
Nucleic Acids Research 30 (1), 87-90, 2002
1532002
Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq
D Bottomly, SL Kyler, SK McWeeney, GS Yochum
Nucleic acids research 38 (17), 5735-5745, 2010
1492010
Nonreceptor tyrosine kinases in prostate
CYM Chang, HJ Kung, CP Evans
Neoplasia 9 (2), 90-100, 2007
1362007
Does the urinary microbiome play a role in urgency urinary incontinence and its severity?
L Karstens, M Asquith, S Davin, P Stauffer, D Fair, WT Gregory, ...
Frontiers in cellular and infection microbiology 6, 78, 2016
1262016
Utilizing RNA-Seq data for de novo coexpression network inference
OD Iancu, S Kawane, D Bottomly, R Searles, R Hitzemann, S McWeeney
Bioinformatics 28 (12), 1592-1597, 2012
1202012
A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib
SK McWeeney, LC Pemberton, MM Loriaux, K Vartanian, SG Willis, ...
Blood, The Journal of the American Society of Hematology 115 (2), 315-325, 2010
1202010
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