Francisco M Couto

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Catia PesquitaLASIGE, Dep. Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at xldb.di.fc.ul.pt
Mário J. SilvaProfessor of Computer Science and Engineering at IST, Portugal; Senior Researcher at INESC-ID LisboaVerified email at tecnico.ulisboa.pt
Daniel FariaLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de LisboaVerified email at tecnico.ulisboa.pt
Andre LamuriasAalborg UniversityVerified email at cs.aau.dk
Isabel F. CruzUniversity of Illinois at ChicagoVerified email at uic.edu
Pedro M. CoutinhoProfessor, Université d'Aix-Marseille, FranceVerified email at afmb.univ-mrs.fr
João D FerreiraLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de LisboaVerified email at fc.ul.pt
Emanuel SantosInvited Assistant Professor, Faculty of Sciences, University of LisbonVerified email at di.fc.ul.pt
Hugo P. BastosPost-Doc Research Associate, University of CambridgeVerified email at cam.ac.uk
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de Informática, LASIGEVerified email at di.fc.ul.pt
Tiago GregoUniversity of CambridgeVerified email at cam.ac.uk
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesVerified email at zbmed.de
Luka A. ClarkeBIOISI: Biosystems & Integrative Sciences Institute, University of Lisbon, PortugalVerified email at fc.ul.pt
Paulo Esteves-VerissimoProfessor of Computer Science, KAUSTVerified email at kaust.edu.sa
Fabricio Alves Barbosa da SilvaResearcher, FIOCRUZVerified email at fiocruz.br
Cosmin StroeUniversity of Illinois at ChicagoVerified email at cs.uic.edu
Luis Filipe LopesUniversidade Nova de Lisboa - Instituto de Higiene e Medicina TropicalVerified email at ihmt.unl.pt
Ana Teresa FreitasProfessor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de LisboaVerified email at inesc-id.pt
Bruno MartinsComputer Science and Engineering, Instituto Superior Técnico, University of LisbonVerified email at tecnico.ulisboa.pt
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk

Francisco M Couto

LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, Portugal

Verified email at campus.ul.pt - Homepage

Text Mining Data Mining Knowledge Management Biomedical Informatics Bioinformatics


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Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS comput biol 5 (7), e1000443, 2009	814	2009
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9 (5), 1-16, 2008	351	2008
Measuring semantic similarity between Gene Ontology terms FM Couto, MJ Silva, PM Coutinho Data & knowledge engineering 61 (1), 137-152, 2007	278	2007
The agreementmakerlight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto OTM Confederated International Conferences" On the Move to Meaningful …, 2013	232	2013
Facts from text—is text mining ready to deliver? D Rebholz-Schuhmann, H Kirsch, F Couto PLoS Biol 3 (2), e65, 2005	191	2005
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	156	2015
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors FM Couto, MJ Silva, PM Coutinho Proceedings of the 14th ACM international conference on Information and …, 2005	141	2005
Evaluating gobased semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcão, F Couto Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007	128	2007
Using AgreementMaker to align ontologies for OAEI 2011 IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari ISWC international workshop on ontology matching (OM) 814, 114-121, 2011	100	2011
GOAnnotator: linking protein GO annotations to evidence text F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ... Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006	78	2006
Finding genomic ontology terms in text using evidence content F Couto, M Silva, P Coutinho BMC bioinformatics 6 (Suppl 1), S21, 2005	75	2005
Disjunctive shared information between ontology concepts: application to Gene Ontology FM Couto, MJ Silva Journal of biomedical semantics 2 (1), 1-16, 2011	73	2011
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015	71	2015
Implementation of a functional semantic similarity measure between gene-products FM Couto, MJ Silva, PM Coutinho Department of Informatics, University of Lisbon, 2003	66	2003
The semantic web in translational medicine: current applications and future directions CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto Briefings in bioinformatics 16 (1), 89-103, 2015	65	2015
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009	64	2009
Semantic similarity for automatic classification of chemical compounds JD Ferreira, FM Couto PLoS Comput Biol 6 (9), e1000937, 2010	63	2010
AgreementMakerLight results for OAEI 2013. D Faria, C Pesquita, E Santos, IF Cruz, FM Couto OM, 101-108, 2013	61	2013
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume, 2013	57	2013
Automatic concept recognition using the human phenotype ontology reference and test suite corpora T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ... Database 2015, 2015	56	2015

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