Francisco M Couto - Google Scholar Citations

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Catia PesquitaAssistant Professor, LASIGE, Informática, Faculdade de Ciências, Universidade de LisboaVerified email at xldb.di.fc.ul.pt
Mário J. SilvaProfessor of Computer Science and Engineering at IST, Portugal; Senior Researcher at INESC-ID LisboaVerified email at ist.utl.pt
Daniel FariaInstituto Gulbenkian de Ciência, Oeiras, PortugalVerified email at xldb.di.fc.ul.pt
Pedro M. CoutinhoProfessor, Université d'Aix-Marseille, FranceVerified email at afmb.univ-mrs.fr
João D FerreiraLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de LisboaVerified email at fc.ul.pt
Andre LamuriasLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, 1749-016 LisboaVerified email at lasige.di.fc.ul.pt
Isabel F. CruzUniversity of Illinois at ChicagoVerified email at uic.edu
Hugo P. BastosPost-Doc Research Associate, University of CambridgeVerified email at cam.ac.uk
Emanuel SantosInvited Assistant Professor, Faculty of Sciences, University of LisbonVerified email at di.fc.ul.pt
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de Informática, LASIGEVerified email at di.fc.ul.pt
Tiago GregoUniversity of CambridgeVerified email at cam.ac.uk
Dietrich Rebholz-SchuhmannProfessor for Informatics NUIG, Director Insight GalwayVerified email at insight-centre.org
Luka A. ClarkeBIOISI: Biosystems & Integrative Sciences Institute, University of Lisbon, PortugalVerified email at fc.ul.pt
Paulo Esteves-VerissimoProfessor of Computer Science and Engineering, University of Luxembourg, SnT/FSTCVerified email at uni.lu
Fabricio Alves Barbosa da SilvaResearcher, FIOCRUZVerified email at fiocruz.br
Luis Filipe LopesPost-doctoral fellowship at National Museum of Natural History and Science, PortugalVerified email at museus.ul.pt
Ana Teresa FreitasProfessor of Computer Science, INESC-ID, Instituto Superior Técnico, Universidade Técnica de LisboaVerified email at inesc-id.pt
Cosmin StroeUniversity of Illinois at ChicagoVerified email at cs.uic.edu
Bruno MartinsProfessor, Computer Science and Engineering Department, IST, University of LisbonVerified email at ist.utl.pt
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk

Francisco M Couto

LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, Portugal

Verified email at di.fc.ul.pt - Homepage

Text and Data Mining Data Integration and Sharing Biomedical Informatics Semantic Web


Title	Cited by	Year
Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS computational biology 5 (7), e1000443, 2009	676	2009
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9 (5), S4, 2008	297	2008
Measuring semantic similarity between Gene Ontology terms FM Couto, MJ Silva, PM Coutinho Data & knowledge engineering 61 (1), 137-152, 2007	242	2007
Facts from text—is text mining ready to deliver? D Rebholz-Schuhmann, H Kirsch, F Couto PLoS Biol 3 (2), e65, 2005	181	2005
The agreementmakerlight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto OTM Confederated International Conferences" On the Move to Meaningful …, 2013	147	2013
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors FM Couto, MJ Silva, PM Coutinho Proceedings of the 14th ACM international conference on Information and …, 2005	120	2005
Evaluating gobased semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcão, F Couto Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007	93	2007
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), S2, 2015	84	2015
Finding genomic ontology terms in text using evidence content F Couto, M Silva, P Coutinho BMC bioinformatics 6 (Suppl 1), S21, 2005	75	2005
GOAnnotator: linking protein GO annotations to evidence text F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ... Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006	71	2006
Disjunctive shared information between ontology concepts: application to Gene Ontology FM Couto, MJ Silva Journal of biomedical semantics 2 (1), 5, 2011	63	2011
Using AgreementMaker to align ontologies for OAEI 2011 IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari ISWC international workshop on ontology matching (OM) 814, 114-121, 2011	58	2011
The semantic web in translational medicine: current applications and future directions CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto Briefings in bioinformatics 16 (1), 89-103, 2013	56	2013
Implementation of a functional semantic similarity measure between gene-products FM Couto, MJ Silva, PM Coutinho Department of Informatics, University of Lisbon, 2003	55	2003
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015	51	2015
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009	51	2009
Semantic similarity for automatic classification of chemical compounds JD Ferreira, FM Couto PLoS computational biology 6 (9), e1000937, 2010	50	2010
AgreementMakerLight results for OAEI 2013. D Faria, C Pesquita, E Santos, IF Cruz, FM Couto OM, 101-108, 2013	49	2013
Automatic concept recognition using the human phenotype ontology reference and test suite corpora T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ... Database 2015, 2015	46	2015
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume, 2013	43	2013

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