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Ronny Lorenz
Ronny Lorenz
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Bestätigte E-Mail-Adresse bei tbi.univie.ac.at
Titel
Zitiert von
Zitiert von
Jahr
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6, 1-14, 2011
45772011
The vienna RNA websuite
AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker
Nucleic acids research 36 (suppl_2), W70-W74, 2008
23952008
The ViennaRNA web services
AR Gruber, SH Bernhart, R Lorenz
RNA bioinformatics, 307-326, 2015
1622015
Predicting RNA secondary structures from sequence and probing data
R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker
Methods 103, 86-98, 2016
1212016
SHAPE directed RNA folding
R Lorenz, D Luntzer, IL Hofacker, PF Stadler, MT Wolfinger
Bioinformatics 32 (1), 145-147, 2016
1062016
RNA folding with hard and soft constraints
R Lorenz, IL Hofacker, PF Stadler
Algorithms for Molecular Biology 11, 1-13, 2016
1012016
ViennaRNA Package 2.0
PF Stadler, IL Hofacker, R Lorenz, SH Bernhart, H Tafer, C Siederdissen
Algorithms, 2011
1012011
Höner zu Siederdissen C et al (2011) ViennaRNA package 2.0
R Lorenz, SH Bernhart
Algorithms Mol Biol 6, 26, 0
87
TSSAR: TSS annotation regime for dRNA-seq data
F Amman, MT Wolfinger, R Lorenz, IL Hofacker, PF Stadler, S Findeiß
BMC bioinformatics 15, 1-11, 2014
672014
Asymmetry of stem cell fate and the potential impact of the niche: observations, simulations, and interpretations
I Roeder, R Lorenz
Stem cell reviews 2, 171-180, 2006
572006
Design criteria for synthetic riboswitches acting on transcription
M Wachsmuth, G Domin, R Lorenz, R Serfling, S Findeiß, PF Stadler, ...
RNA biology 12 (2), 221-231, 2015
542015
2D meets 4G: G-quadruplexes in RNA secondary structure prediction
R Lorenz, SH Bernhart, J Qin, CH zu Siederdissen, A Tanzer, F Amman, ...
IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013
512013
Model-free RNA sequence and structure alignment informed by SHAPE probing reveals a conserved alternate secondary structure for 16S rRNA
CA Lavender, R Lorenz, G Zhang, R Tamayo, IL Hofacker, KM Weeks
PLOS computational biology 11 (5), e1004126, 2015
452015
Nematode sbRNAs: homologs of vertebrate Y RNAs
I Boria, AR Gruber, A Tanzer, SH Bernhart, R Lorenz, MM Mueller, ...
Journal of molecular evolution 70, 346-358, 2010
432010
Animal snoRNAs and scaRNAs with exceptional structures
M Marz, AR Gruber, C Höner zu Siederdissen, F Amman, S Badelt, ...
RNA biology 8 (6), 938-946, 2011
412011
Evolving better RNAfold structure prediction
WB Langdon, J Petke, R Lorenz
Genetic Programming: 21st European Conference, EuroGP 2018, Parma, Italy …, 2018
372018
2D projections of RNA folding landscapes
R Lorenz, C Flamm, IL Hofacker
Gesellschaft für Informatik eV, 2009
372009
RNA modifications in structure prediction–Status quo and future challenges
A Tanzer, IL Hofacker, R Lorenz
Methods 156, 32-39, 2019
362019
A novel view on stem cell development: analysing the shape of cellular genealogies
I Glauche, R Lorenz, D Hasenclever, I Roeder
Cell Proliferation 42 (2), 248-263, 2009
352009
Predicting RNA structure: advances and limitations
IL Hofacker, R Lorenz
RNA folding: methods and protocols, 1-19, 2014
232014
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