Franziska Hufsky
Franziska Hufsky
RNA Bioinformatics and High Throughput Analysis, Friedrich Schiller University Jena
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Cited by
Cited by
Significance estimation for large scale metabolomics annotations by spectral matching
K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ...
Nature Communications 8 (1), 1494, 2017
Computational mass spectrometry for small molecules
K Scheubert, F Hufsky, S Böcker
Journal of cheminformatics 5, 1-24, 2013
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
Identifying the unknowns by aligning fragmentation trees
F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatos, S Böcker
Analytical Chemistry 84 (7), 3417-3426, 0
Computational mass spectrometry for small-molecule fragmentation
F Hufsky, K Scheubert, S Böcker
TrAC Trends in Analytical Chemistry 53, 41-48, 2014
Mining molecular structure databases: Identification of small molecules based on fragmentation mass spectrometry data
F Hufsky, S Böcker
Mass spectrometry reviews 36 (5), 624-633, 2017
New kids on the block: novel informatics methods for natural product discovery
F Hufsky, K Scheubert, S Böcker
Natural product reports 31 (6), 807-817, 2014
A new era of virus bioinformatics
B Ibrahim, DP McMahon, F Hufsky, M Beer, L Deng, P Le Mercier, ...
Virus research 251, 86-90, 2018
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6 (1), 34589, 2016
< i> De Novo</i> Analysis of Electron Impact Mass Spectra Using Fragmentation Trees
F Hufsky, M Rempt, F Rasche, G Pohnert, S Böcker
Analytica Chimica Acta 739, 67-76, 2012
Computing fragmentation trees from metabolite multiple mass spectrometry data
K Scheubert, F Hufsky, F Rasche, S Böcker
Journal of computational biology 18 (11), 1383-1397, 2011
Massive effect on LncRNAs in human monocytes during fungal and bacterial infections and in response to vitamins A and D
K Riege, M Hölzer, TE Klassert, E Barth, J Bräuer, M Collatz, F Hufsky, ...
Scientific reports 7 (1), 40598, 2017
Molecular formula identification using isotope pattern analysis and calculation of fragmentation trees
K Dührkop, F Hufsky, S Böcker
Mass Spectrometry 3 (Special_Issue_2), S0037-S0037, 2014
Predicting the presence of uncommon elements in unknown biomolecules from isotope patterns
M Meusel, F Hufsky, F Panter, D Krug, R Müller, S Böcker
Analytical chemistry 88 (15), 7556-7566, 2016
Swiftly computing center strings
F Hufsky, L Kuchenbecker, K Jahn, J Stoye, S Böcker
BMC Bioinformatics 12 (1), 106, 2011
Determination of 15N-Incorporation into Plant Proteins and their Absolute Quantitation: A New Tool to Study Nitrogen Flux Dynamics and Protein Pool Sizes Elicited …
L Ullmann-Zeunert, A Muck, N Wielsch, F Hufsky, MA Stanton, S Bartram, ...
Journal of proteome research 11 (10), 4947-4960, 2012
Fast alignment of fragmentation trees
F Hufsky, K Dührkop, F Rasche, M Chimani, S Böcker
Bioinformatics 28 (12), i265-i273, 2012
Virologists—Heroes need weapons
F Hufsky, B Ibrahim, M Beer, L Deng, PL Mercier, DP McMahon, ...
PLoS pathogens 14 (2), e1006771, 2018
The role of non-coding RNAs in the human placenta
M Žarković, F Hufsky, UR Markert, M Marz
Cells 11 (9), 1588, 2022
Finding characteristic substructures for metabolite classes
M Ludwig, F Hufsky, S Elshamy, S Böcker
German Conference on Bioinformatics, 23-38, 2012
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Articles 1–20