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Manoj Tyagi
Manoj Tyagi
National Cancer Institute, NIH
Verified email at nih.gov
Title
Cited by
Cited by
Year
Performance of Common Analysis Methods for Detecting Low-Frequency Single Nucleotide Variants in Targeted Next-Generation Sequence Data
DH Spencer, M Tyagi, F Vallania, AJ Bredemeyer, JD Pfeifer, RD Mitra, ...
The Journal of Molecular Diagnostics 16 (1), 75-88, 2014
1562014
Cancer missense mutations alter binding properties of proteins and their interaction networks
H Nishi, M Tyagi, S Teng, BA Shoemaker, K Hashimoto, E Alexov, ...
PLoS One 8 (6), e66273, 2013
1342013
A short survey on protein blocks
AP Joseph, G Agarwal, S Mahajan, JC Gelly, LS Swapna, B Offmann, ...
Biophysical reviews 2, 137-145, 2010
1342010
Local protein structures
B Offmann, M Tyagi, AG de Brevern
Current Bioinformatics 2 (3), 165-202, 2007
1222007
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins
BA Shoemaker, D Zhang, M Tyagi, RR Thangudu, JH Fong, ...
Nucleic acids research 40 (D1), D834-D840, 2012
902012
Inferred Biomolecular Interaction Server—a web server to analyze and predict protein interacting partners and binding sites
BA Shoemaker, D Zhang, RR Thangudu, M Tyagi, JH Fong, ...
Nucleic acids research 38 (suppl 1), D518-D524, 2010
872010
Tremelimumab in combination with microwave ablation in patients with refractory biliary tract cancer
C Xie, AG Duffy, D Mabry‐Hrones, B Wood, E Levy, V Krishnasamy, ...
Hepatology 69 (5), 2048-2060, 2019
832019
A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications
M Tyagi, VS Gowri, N Srinivasan, AG de Brevern, B Offmann
PROTEINS: Structure, Function, and Bioinformatics 65 (1), 32-39, 2006
812006
Protein structure mining using a structural alphabet
M Tyagi, AG De Brevern, N Srinivasan, B Offmann
Proteins: Structure, Function, and Bioinformatics 71 (2), 920-937, 2008
752008
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet
M Tyagi, P Sharma, CS Swamy, F Cadet, N Srinivasan, AG de Brevern, ...
Nucleic acids research 34 (suppl_2), W119-W123, 2006
732006
Large-scale mapping of human protein interactome using structural complexes
M Tyagi, K Hashimoto, BA Shoemaker, S Wuchty, AR Panchenko
EMBO reports 13 (3), 266-271, 2012
572012
Whole-exome sequencing reveals germline-mutated small cell lung cancer subtype with favorable response to DNA repair–targeted therapies
C Tlemsani, N Takahashi, L Pongor, VN Rajapakse, M Tyagi, X Wen, ...
Science translational medicine 13 (578), eabc7488, 2021
442021
Analysis of loop boundaries using different local structure assignment methods
M Tyagi, A Bornot, B Offmann, AG de Brevern
Protein Science 18 (9), 1869-1881, 2009
442009
Impact of the methylation classifier and ancillary methods on CNS tumor diagnostics
Z Wu, Z Abdullaev, D Pratt, HJ Chung, S Skarshaug, V Zgonc, C Perry, ...
Neuro-oncology 24 (4), 571-581, 2022
412022
Exploring functional roles of multibinding protein interfaces
M Tyagi, BA Shoemaker, SH Bryant, AR Panchenko
Protein Science 18 (8), 1674-1683, 2009
342009
Immuno-transcriptomic profiling of extracranial pediatric solid malignancies
AS Brohl, S Sindiri, JS Wei, D Milewski, HC Chou, YK Song, X Wen, ...
Cell reports 37 (8), 2021
312021
Protein short loop prediction in terms of a structural alphabet
M Tyagi, A Bornot, B Offmann, AG De Brevern
Computational Biology and Chemistry 33 (4), 329-333, 2009
302009
An activating mutation of interferon regulatory factor 4 (IRF4) in adult T-cell leukemia
MA Cherian, S Olson, H Sundaramoorthi, K Cates, X Cheng, J Harding, ...
Journal of Biological Chemistry 293 (18), 6844-6858, 2018
262018
Homology inference of protein-protein interactions via conserved binding sites
M Tyagi, RR Thangudu, D Zhang, SH Bryant, T Madej, AR Panchenko
PLoS One 7 (1), e28896, 2012
222012
Knowledge-based annotation of small molecule binding sites in proteins
RR Thangudu, M Tyagi, BA Shoemaker, SH Bryant, AR Panchenko, ...
BMC bioinformatics 11, 1-12, 2010
212010
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Articles 1–20