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Xiaotu Ma
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Germline mutations in predisposition genes in pediatric cancer
J Zhang, MF Walsh, G Wu, MN Edmonson, TA Gruber, J Easton, ...
New England Journal of Medicine 373 (24), 2336-2346, 2015
12112015
The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma
Nature genetics 46 (5), 444-450, 2014
10322014
The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia
Y Liu, J Easton, Y Shao, J Maciaszek, Z Wang, MR Wilkinson, ...
Nature genetics 49 (8), 1211-1218, 2017
7982017
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
X Ma, YU Liu, Y Liu, LB Alexandrov, MN Edmonson, C Gawad, X Zhou, ...
Nature 555 (7696), 371-376, 2018
7152018
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
H Bolouri, JE Farrar, T Triche Jr, RE Ries, EL Lim, TA Alonzo, Y Ma, ...
Nature medicine 24 (1), 103-112, 2018
6512018
Genomic Landscape of Ewing Sarcoma Defines an Aggressive Subtype with Co-Association of STAG2 and TP53 Mutations
F Tirode, D Surdez, X Ma, M Parker, MC Le Deley, A Bahrami, Z Zhang, ...
Cancer discovery 4 (11), 1342-1353, 2014
5092014
Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia
X Ma, M Edmonson, D Yergeau, DM Muzny, OA Hampton, M Rusch, ...
Nature communications 6 (1), 6604, 2015
4502015
Deregulation of DUX4 and ERG in acute lymphoblastic leukemia
J Zhang, K McCastlain, H Yoshihara, B Xu, Y Chang, ML Churchman, ...
Nature genetics 48 (12), 1481-1489, 2016
2872016
Analysis of error profiles in deep next-generation sequencing data
X Ma, Y Shao, L Tian, DA Flasch, HL Mulder, MN Edmonson, Y Liu, ...
Genome biology 20, 1-15, 2019
2592019
Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia
B Li, SW Brady, X Ma, S Shen, Y Zhang, Y Li, K Szlachta, L Dong, Y Liu, ...
Blood, The Journal of the American Society of Hematology 135 (1), 41-55, 2020
2142020
Negative feedback–defective PRPS1 mutants drive thiopurine resistance in relapsed childhood ALL
B Li, H Li, Y Bai, R Kirschner-Schwabe, JJ Yang, Y Chen, G Lu, ...
Nature medicine 21 (6), 563-571, 2015
1722015
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
M Rusch, J Nakitandwe, S Shurtleff, S Newman, Z Zhang, MN Edmonson, ...
Nature communications 9 (1), 3962, 2018
1692018
The genomic landscape of pediatric acute lymphoblastic leukemia
SW Brady, KG Roberts, Z Gu, L Shi, S Pounds, D Pei, C Cheng, Y Dai, ...
Nature genetics 54 (9), 1376-1389, 2022
1432022
CGI: a new approach for prioritizing genes by combining gene expression and protein–protein interaction data
X Ma, H Lee, L Wang, F Sun
Bioinformatics 23 (2), 215-221, 2007
1342007
Genetic risk for subsequent neoplasms among long-term survivors of childhood cancer
Z Wang, CL Wilson, J Easton, A Thrasher, H Mulder, Q Liu, DJ Hedges, ...
Journal of Clinical Oncology 36 (20), 2078, 2018
1262018
St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem
C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ...
Cancer discovery 11 (5), 1082-1099, 2021
1212021
Mutational landscape and patterns of clonal evolution in relapsed pediatric acute lymphoblastic leukemia
E Waanders, Z Gu, SM Dobson, Ž Antić, JC Crawford, X Ma, ...
Blood cancer discovery 1 (1), 96-111, 2020
1192020
Genomic subtyping and therapeutic targeting of acute erythroleukemia
I Iacobucci, J Wen, M Meggendorfer, JK Choi, L Shi, SB Pounds, ...
Nature genetics 51 (4), 694-704, 2019
1182019
CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non–small-cell lung cancer
KW Tam, W Zhang, J Soh, V Stastny, M Chen, H Sun, K Thu, JJ Rios, ...
Journal of thoracic oncology 8 (11), 1378-1388, 2013
1032013
DNA methylation data analysis and its application to cancer research
X Ma, YW Wang, MQ Zhang, AF Gazdar
Epigenomics 5 (3), 301-316, 2013
1002013
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