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Matthew O'Meara
Matthew O'Meara
Verified email at umich.edu - Homepage
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Cited by
Year
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing
DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ...
Nature 583 (7816), 459-468, 2020
29052020
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
6912017
Ultra-large library docking for discovering new chemotypes
J Lyu, S Wang, TE Balius, I Singh, A Levit, YS Moroz, MJ O’Meara, T Che, ...
Nature 566 (7743), 224-229, 2019
3842019
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ...
Science 370 (6521), eabe9403, 2020
3252020
Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta
MJ O’Meara, A Leaver-Fay, MD Tyka, A Stein, K Houlihan, F DiMaio, ...
Journal of chemical theory and computation 11 (2), 609-622, 2015
2052015
Scientific benchmarks for guiding macromolecular energy function improvement
A Leaver-Fay, MJ O’Meara, M Tyka, R Jacak, Y Song, EH Kellogg, ...
Methods in enzymology 523, 2013
2052013
Morphological cell profiling of SARS-CoV-2 infection identifies drug repurposing candidates for COVID-19
C Mirabelli, JW Wotring, CJ Zhang, SM McCarty, R Fursmidt, CD Pretto, ...
Proceedings of the National Academy of Sciences 118 (36), 2021
1002021
The Cryptococcus neoformans Rim101 transcription factor directly regulates genes required for adaptation to the host
TR O'Meara, W Xu, KM Selvig, MJ O'Meara, AP Mitchell, JA Alspaugh
Molecular and Cellular Biology 34 (4), 673-684, 2014
802014
Drug-induced phospholipidosis confounds drug repurposing for SARS-CoV-2
TA Tummino, VV Rezelj, B Fischer, A Fischer, MJ O’Meara, B Monel, ...
Science 373 (6554), 541-547, 2021
762021
The recognition of identical ligands by unrelated proteins
S Barelier, T Sterling, MJ O’Meara, BK Shoichet
ACS chemical biology 10 (12), 2772-2784, 2015
592015
A web resource for standardized benchmark datasets, metrics, and Rosetta protocols for macromolecular modeling and design
S Ó Conchúir, KA Barlow, RA Pache, N Ollikainen, K Kundert, ...
PLOS one 10 (9), e0130433, 2015
592015
Role of Electrostatic Repulsion in Controlling pH-Dependent Conformational Changes of Viral Fusion Proteins
JS Harrison, CD Higgins, MJ O’Meara, JF Koellhoffer, BA Kuhlman, ...
Structure 21 (7), 1085-1096, 2013
542013
High-Throughput Screening Identifies Genes Required for Candida albicans Induction of Macrophage Pyroptosis
TR O’Meara, K Duah, CX Guo, ME Maxson, RG Gaudet, K Koselny, ...
MBio 9 (4), e01581-18, 2018
412018
Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a …
TR O’Meara, MJ O’Meara, EJ Polvi, MR Pourhaghighi, SD Liston, ZY Lin, ...
PLoS biology 17 (7), e3000358, 2019
302019
Prediction of enzymatic pathways by integrative pathway mapping
S Calhoun, M Korczynska, DJ Wichelecki, B San Francisco, S Zhao, ...
eLife 7, e31097, 2018
272018
Local delivery of stabilized chondroitinase ABC degrades chondroitin sulfate proteoglycans in stroke-injured rat brains
MH Hettiaratchi, MJ O'Meara, CJ Teal, SL Payne, AJ Pickering, ...
Journal of Controlled Release 297, 14-25, 2019
252019
A Unified Stochastic Gradient Approach to Designing Bayesian-Optimal Experiments
A Foster, M Jankowiak, M O’Meara, YW Teh, T Rainforth
International Conference on Artificial Intelligence and Statistics, 2959-2969, 2020
182020
Ligand similarity complements sequence, physical interaction, and co-expression for gene function prediction
MJ O’Meara, S Ballouz, BK Shoichet, J Gillis
PloS one 11 (7), e0160098, 2016
162016
Structures of the σ2 receptor enable docking for bioactive ligand discovery
A Alon, J Lyu, JM Braz, TA Tummino, V Craik, MJ O’Meara, CM Webb, ...
Nature 600 (7890), 759-764, 2021
14*2021
Property-Unmatched Decoys in Docking Benchmarks
RM Stein, Y Yang, TE Balius, MJ O’Meara, J Lyu, J Young, K Tang, ...
Journal of Chemical Information and Modeling 61 (2), 699-714, 2021
142021
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