Paula Jouhten
Paula Jouhten
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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A multi-level study of recombinant Pichia pastoris in different oxygen conditions
K Baumann, M Carnicer, M Dragosits, AB Graf, J Stadlmann, P Jouhten, ...
BMC systems biology 4 (1), 1-22, 2010
Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates
A Sola, P Jouhten, H Maaheimo, F Sánchez-Ferrando, T Szyperski, ...
Microbiology 153 (1), 281-290, 2007
Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN. PK113-1A
P Jouhten, E Rintala, A Huuskonen, A Tamminen, M Toivari, M Wiebe, ...
BMC systems biology 2 (1), 1-19, 2008
Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose: methanol mixtures
J Jordà, P Jouhten, E Cámara, H Maaheimo, J Albiol, P Ferrer
Microbial cell factories 11 (1), 1-14, 2012
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
M Tramontano, S Andrejev, M Pruteanu, M Klünemann, M Kuhn, ...
Nature microbiology 3 (4), 514-522, 2018
Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic …
MG Wiebe, E Rintala, A Tamminen, H Simolin, L Salusjärvi, M Toivari, ...
FEMS Yeast Research 8 (1), 140-154, 2008
Inferring branching pathways in genome-scale metabolic networks
E Pitkänen, P Jouhten, J Rousu
BMC systems biology 3 (1), 1-22, 2009
Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species
E Pitkänen, P Jouhten, J Hou, MF Syed, P Blomberg, J Kludas, M Oja, ...
PLoS Comput Biol 10 (2), e1003465, 2014
Correlation of gene expression and protein production rate-a system wide study
M Arvas, T Pakula, B Smit, J Rautio, H Koivistoinen, P Jouhten, E Lindfors, ...
BMC genomics 12 (1), 1-25, 2011
An analytic and systematic framework for estimating metabolic flux ratios from 13 C tracer experiments
A Rantanen, J Rousu, P Jouhten, N Zamboni, H Maaheimo, E Ukkonen
BMC bioinformatics 9 (1), 1-19, 2008
l‐galactonate dehydratase is part of the fungal path for d‐galacturonic acid catabolism
S Kuorelahti, P Jouhten, H Maaheimo, M Penttilä, P Richard
Molecular microbiology 61 (4), 1060-1068, 2006
Saccharomyces cerevisiae metabolism in ecological context
P Jouhten, O Ponomarova, R Gonzalez, KR Patil
FEMS yeast research 16 (7), fow080, 2016
Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae
T Strucko, K Zirngibl, F Pereira, E Kafkia, ET Mohamed, M Rettel, F Stein, ...
Metabolic engineering 47, 73-82, 2018
Hypoxia and GABA shunt activation in the pathogenesis of Alzheimer's disease
A Salminen, P Jouhten, T Sarajärvi, A Haapasalo, M Hiltunen
Neurochemistry international 92, 13-24, 2016
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis
E Pitkänen, A Åkerlund, A Rantanen, P Jouhten, E Ukkonen
Journal of integrative bioinformatics 5 (2), 188-200, 2008
13 C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose
P Jouhten, E Pitkänen, T Pakula, M Saloheimo, M Penttilä, H Maaheimo
BMC systems biology 3 (1), 1-16, 2009
Dynamic flux balance analysis of the metabolism of Saccharomyces cerevisiae during the shift from fully respirative or respirofermentative metabolic states to …
P Jouhten, M Wiebe, M Penttilä
The FEBS journal 279 (18), 3338-3354, 2012
Transcriptional responses of Saccharomyces cerevisiae to shift from respiratory and respirofermentative to fully fermentative metabolism
E Rintala, P Jouhten, M Toivari, MG Wiebe, H Maaheimo, M Penttilä, ...
Omics: a journal of integrative biology 15 (7-8), 461-476, 2011
Yeast metabolic chassis designs for diverse biotechnological products
P Jouhten, T Boruta, S Andrejev, F Pereira, I Rocha, KR Patil
Scientific reports 6 (1), 1-9, 2016
Xylose-induced dynamic effects on metabolism and gene expression in engineered Saccharomyces cerevisiae in anaerobic glucose-xylose cultures
S Alff-Tuomala, L Salusjärvi, D Barth, M Oja, M Penttilä, JP Pitkänen, ...
Applied microbiology and biotechnology 100 (2), 969-985, 2016
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