Marcin J. Skwark
Marcin J. Skwark
Other namesMarcin Skwark
Bioinformatics Lead, InstaDeep
Verified email at
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SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
H Viklund, A Bernsel, M Skwark, A Elofsson
Bioinformatics 24 (24), 2928-2929, 2008
Improved contact predictions using the recognition of protein like contact patterns
MJ Skwark, D Raimondi, M Michel, A Elofsson
PLoS computational biology 10 (11), e1003889, 2014
PconsFold: improved contact predictions improve protein models
M Michel, S Hayat, MJ Skwark, C Sander, DS Marks, A Elofsson
Bioinformatics 30 (17), i482-i488, 2014
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
MJ Skwark, NJ Croucher, S Puranen, C Chewapreecha, M Pesonen, ...
PLoS genetics 13 (2), e1006508, 2017
PconsC: combination of direct information methods and alignments improves contact prediction
MJ Skwark, A Abdel-Rehim, A Elofsson
Bioinformatics 29 (14), 1815-1816, 2013
Improving contact prediction along three dimensions
C Feinauer, MJ Skwark, A Pagnani, E Aurell
PLoS computational biology 10 (10), e1003847, 2014
Assessment of global and local model quality in CASP8 using Pcons and ProQ
P Larsson, MJ Skwark, B Wallner, A Elofsson
Proteins: Structure, Function, and Bioinformatics 77 (S9), 167-172, 2009
Predicting accurate contacts in thousands of Pfam domain families using PconsC3
M Michel, MJ Skwark, D MenÚndez Hurtado, M Ekeberg, A Elofsson
Bioinformatics 33 (18), 2859-2866, 2017
Protein contact prediction from amino acid co-evolution using convolutional networks for graph-valued images
V Golkov, MJ Skwark, D Alexey, T Brox, J Meiler, D Cremers
Advances in Neural Information Processing Systems, 730-738, 2016
The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
M Lopez, H Dalla-Torre, L Gonzalez, J Mendoza-Revilla, NL Carranza, ...
Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis
CM Borza, Y Su, TL Tran, L Yu, N Steyns, KJ Temple, MJ Skwark, J Meiler, ...
Matrix Biology 57, 258-271, 2017
Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery
VP Waman, SC Vedithi, SE Thomas, BP Bannerman, A Munir, MJ Skwark, ...
Emerging microbes & infections 8 (1), 109-118, 2019
PconsD: ultra rapid, accurate model quality assessment for protein structure prediction
MJ Skwark, A Elofsson
Bioinformatics 29 (14), 1817-1818, 2013
Early computational detection of potential high-risk SARS-CoV-2 variants
K Beguir, MJ Skwark, Y Fu, T Pierrot, NL Carranza, A Laterre, I Kadri, ...
Computers in biology and medicine 155, 106618, 2023
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
SC Vedithi, CHM Rodrigues, S Portelli, MJ Skwark, M Das, DB Ascher, ...
Computational and Structural Biotechnology Journal 18, 271-286, 2020
The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer
A Saleh, Y Noguchi, R Aramayo, ME Ivanova, KM Stevens, A Montoya, ...
Nature communications 13 (1), 2915, 2022
Membrane remodeling capacity of a vesicle‐inducing glycosyltransferase
C Ge, J Gˇmez‐Llobregat, MJ Skwark, JM Ruysschaert, ┼ Wieslander, ...
The FEBS journal 281 (16), 3667-3684, 2014
Mycobacterium abscessus pathogenesis identified by phenogenomic analyses
L Boeck, S Burbaud, M Skwark, WH Pearson, J Sangen, AW Wuest, ...
Nature Microbiology 7 (9), 1431-1441, 2022
3D deep learning for biological function prediction from physical fields
V Golkov, MJ Skwark, A Mirchev, G Dikov, AR Geanes, J Mendenhall, ...
2020 International Conference on 3D Vision (3DV), 928-937, 2020
Improved predictions by Pcons. net using multiple templates
P Larsson, MJ Skwark, B Wallner, A Elofsson
Bioinformatics 27 (3), 426-427, 2011
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