| Heart sound reproduction based on neural network classification of cardiac valve disorders using wavelet transforms of PCG signals S Babaei, A Geranmayeh Computers in biology and medicine 39 (1), 8-15, 2009 | 114 | 2009 |
| Integrative analysis reveals a molecular stratification of systemic autoimmune diseases G Barturen, S Babaei, F CatalàMoll, M MartínezBueno, Z Makowska, ... Arthritis & rheumatology 73 (6), 1073-1085, 2021 | 105 | 2021 |
| Distinct immunological signatures discriminate severe COVID-19 from non-SARS-CoV-2-driven critical pneumonia S Kreutmair, S Unger, NG Núñez, F Ingelfinger, C Alberti, D De Feo, ... Immunity 54 (7), 1578-1593. e5, 2021 | 90 | 2021 |
| Hi-C chromatin interaction networks predict co-expression in the mouse cortex S Babaei, A Mahfouz, M Hulsman, BPF Lelieveldt, J de Ridder, ... PLoS computational biology 11 (5), e1004221, 2015 | 57 | 2015 |
| Detecting recurrent gene mutation in interaction network context using multi-scale graph diffusion S Babaei, M Hulsman, M Reinders, J Ridder BMC bioinformatics 14, 1-12, 2013 | 43 | 2013 |
| 3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes S Babaei, W Akhtar, J De Jong, M Reinders, J De Ridder Nature communications 6 (1), 6381, 2015 | 40 | 2015 |
| Protein secondary structure prediction using modular reciprocal bidirectional recurrent neural networks S Babaei, A Geranmayeh, SA Seyyedsalehi Computer methods and programs in biomedicine 100 (3), 237-247, 2010 | 39 | 2010 |
| Intrarenal activation of adaptive immune effectors is associated with tubular damage and impaired renal function in lupus nephritis C Pamfil, Z Makowska, A De Groof, G Tilman, S Babaei, C Galant, ... Annals of the rheumatic diseases 77 (12), 1782-1789, 2018 | 36 | 2018 |
| Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia E Taskesen, S Babaei, MMJ Reinders, J de Ridder BMC bioinformatics 16, 1-8, 2015 | 32 | 2015 |
| Towards designing modular recurrent neural networks in learning protein secondary structures S Babaei, A Geranmayeh, SA Seyyedsalehi Expert Systems with Applications 39 (6), 6263-6274, 2012 | 20 | 2012 |
| Tumor-associated macrophages trigger MAIT cell dysfunction at the HCC invasive margin B Ruf, M Bruhns, S Babaei, N Kedei, L Ma, M Revsine, MR Benmebarek, ... Cell 186 (17), 3686-3705. e32, 2023 | 18 | 2023 |
| Preexisting comorbidities shape the immune response associated with severe COVID-19 S Kreutmair, M Kauffmann, S Unger, F Ingelfinger, NG Núñez, C Alberti, ... Journal of Allergy and Clinical Immunology 150 (2), 312-324, 2022 | 12 | 2022 |
| Expression quantitative trait locus analysis in systemic sclerosis identifies new candidate genes associated with multiple aspects of disease pathology M Kerick, D GonzálezSerna, E CarneroMontoro, M Teruel, ... Arthritis & Rheumatology 73 (7), 1288-1300, 2021 | 11 | 2021 |
| Targeting extracellular and juxtamembrane FGFR2 mutations in chemotherapy-refractory cholangiocarcinoma M Bitzer, S Spahn, S Babaei, M Horger, S Singer, K Schulze-Osthoff, ... NPJ precision oncology 5 (1), 80, 2021 | 10 | 2021 |
| Distinct immunological signatures discriminate severe COVID-19 from non-SARS-CoV-2-driven critical pneumonia S Kreutmair, S Unger, NG Núñez, F Ingelfinger, C Alberti, D De Feo, ... Immunity 55 (2), 366-375, 2022 | 7 | 2022 |
| Integrating protein family sequence similarities with gene expression to find signature gene networks in breast cancer metastasis S Babaei, E Van Den Akker, J De Ridder, M Reinders Pattern Recognition in Bioinformatics: 6th IAPR International Conference …, 2011 | 6 | 2011 |
| Pruning neural networks for protein secondary structure prediction S Babaei, SA Seyyedsalehi, A Geranmayeh 2008 8th IEEE International Conference on BioInformatics and BioEngineering, 1-6, 2008 | 5 | 2008 |
| S3-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue S Babaei, J Christ, V Sehra, A Makky, M Zidane, K Wistuba-Hamprecht, ... Patterns (N Y) 4 (9), 2023 | 3 | 2023 |
| Abstract P021: Highly multiplexed spatial analysis of the HCC tumor immune microenvironment using CODEX imaging B Ruf, N Kedei, M Bruhns, S Babaei, VV Catania, S Wabitsch, C Ma, ... Cancer Immunology Research 10 (1_Supplement), P021-P021, 2022 | 3 | 2022 |
| eQTL analysis in systemic sclerosis identifies new candidate genes associated with multiple aspects of disease pathology M Kerick, D González-Serna, E Carnero-Montoro, M Teruel, ... Arthritis Rheumatol 10, 2021 | 3 | 2021 |
