| GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ... BMC bioinformatics 21, 1-13, 2020 | 74 | 2020 |
| Fast nanopore sequencing data analysis with SLOW5 H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... Nature biotechnology 40 (7), 1026-1029, 2022 | 54 | 2022 |
| Genopo: a nanopore sequencing analysis toolkit for portable Android devices H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ... Communications Biology 3 (1), 538, 2020 | 20 | 2020 |
| Flexible and efficient handling of nanopore sequencing signal data with slow5tools H Samarakoon, JM Ferguson, SP Jenner, TG Amos, S Parameswaran, ... Genome Biology 24 (1), 69, 2023 | 12 | 2023 |
| Accelerated nanopore basecalling with SLOW5 data format H Samarakoon, JM Ferguson, H Gamaarachchi, IW Deveson Bioinformatics 39 (6), btad352, 2023 | 8 | 2023 |
| Squigulator: simulation of nanopore sequencing signal data with tunable noise parameters H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson bioRxiv, 2023.05. 09.539953, 2023 | 7 | 2023 |
| Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka RMR Nilanthi, H Samarakoon, N Jayawardana, S Wijesundara, ... Phytotaxa 514 (1), 26-38, 2021 | 4 | 2021 |
| F5N : Nanopore Sequence Analysis Toolkit for Android Smartphones H Samarakoon, S Punchihewa, A Senanayake, R Ragel, ... bioRxiv, 2020.03. 22.002030, 2020 | 4 | 2020 |
| Strobilanthes glandulata (Acanthaceae), a new species from Sri Lanka based on the morphological and molecular evidences RMR Nilanthi, H Samarakoon, N Jayawardana, B Hathurusinghe, ... Phytotaxa 573 (1), 1-14, 2022 | 3 | 2022 |
| Interactive visualisation of raw nanopore signal data with Squigualiser H Samarakoon, K Liyanage, J Ferguson, S Parameswaran, ... bioRxiv, 2024.02. 19.581111, 2024 | 1 | 2024 |
| Chloroplast genome, nuclear ITS regions, mitogenome regions, and Skmer analysis resolved the genetic relationship among Cinnamomum species in Sri Lanka PCG Bandaranayake, N Naranpanawa, CB Chandrasekara, ... Plos one 18 (9), e0291763, 2023 | 1 | 2023 |
| Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining K Liyanage, H Samarakoon, S Parameswaran, H Gamaarachchi Scientific Reports 13 (1), 20174, 2023 | | 2023 |
| minimap2-fpga: Integrating hardware-accelerated chaining for efficient end-to-end long-read sequence mapping K Liyanage, H Samarakoon, S Parameswaran, H Gamaarachchi bioRxiv, 2023.05. 30.542681, 2023 | | 2023 |
| SLOW5: a new file format enables massive acceleration of nanopore sequencing data analysis H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... bioRxiv, 2021.06. 29.450255, 2021 | | 2021 |
| Supplementary Materials: GPU Accelerated Adaptive Banded Event Alignment for Rapid Comparative Nanopore Signal Analysis H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ... | | |
Hasindu GamaarachchiSchool of Computer Science and Engineering, UNSW SydneyBestätigte E-Mail-Adresse bei garvan.org.au
