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Matthew Olm
Matthew Olm
Bestätigte E-Mail-Adresse bei stanford.edu - Startseite
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Zitiert von
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
6992017
Measurement of bacterial replication rates in microbial communities
CT Brown, MR Olm, BC Thomas, JF Banfield
Nature biotechnology 34 (12), 1256-1263, 2016
2882016
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
2542020
Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants
A Crits-Christoph, RS Kantor, MR Olm, ON Whitney, B Al-Shayeb, YC Lou, ...
MBio 12 (1), 2021
1852021
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1-7, 2017
1362017
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
MR Olm, A Crits-Christoph, K Bouma-Gregson, BA Firek, MJ Morowitz, ...
Nature Biotechnology 39 (6), 727-736, 2021
132*2021
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
1192019
Consistent metagenome-derived metrics verify and delineate bacterial species boundaries
MR Olm, A Crits-Christoph, S Diamond, A Lavy, PB Matheus Carnevali, ...
Msystems 5 (1), e00731-19, 2020
872020
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ...
Science advances 5 (12), eaax5727, 2019
872019
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
812017
Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome
SF Rahman, MR Olm, MJ Morowitz, JF Banfield
MSystems 3 (1), e00123-17, 2018
602018
Reporting guidelines for human microbiome research: the STORMS checklist
C Mirzayi, A Renson, F Zohra, S Elsafoury, L Geistlinger, LJ Kasselman, ...
Nature medicine 27 (11), 1885-1892, 2021
592021
Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ...
The ISME journal 13 (6), 1618-1634, 2019
55*2019
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6 (1), 1-12, 2018
542018
Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles
CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ...
mBio 9 (2), e00441-18, 2018
51*2018
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes
WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ...
Journal of virology 88 (5), 2461-2480, 2014
462014
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7 (1), 1-16, 2019
412019
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ...
Nature communications 10 (1), 1-15, 2019
372019
Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield
The ISME journal 14 (7), 1834-1846, 2020
362020
Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems
RM Dedrick, TN Mavrich, WL Ng, JC Cervantes Reyes, MR Olm, RE Rush, ...
Molecular microbiology 101 (4), 625-644, 2016
302016
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