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Matthew Olm
Matthew Olm
Bestätigte E-Mail-Adresse bei stanford.edu - Startseite
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Zitiert von
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
13002017
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
3892020
Measurement of bacterial replication rates in microbial communities
CT Brown, MR Olm, BC Thomas, JF Banfield
Nature biotechnology 34 (12), 1256-1263, 2016
3532016
Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants
A Crits-Christoph, RS Kantor, MR Olm, ON Whitney, B Al-Shayeb, YC Lou, ...
MBio 12 (1), 2021
2792021
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
MR Olm, A Crits-Christoph, K Bouma-Gregson, BA Firek, MJ Morowitz, ...
Nature Biotechnology 39 (6), 727-736, 2021
2632021
Reporting guidelines for human microbiome research: the STORMS checklist
C Mirzayi, A Renson, Genomic Standards Consortium, ...
Nature medicine 27 (11), 1885-1892, 2021
1942021
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1814, 2017
1862017
Megaphages infect Prevotella and variants are widespread in gut microbiomes
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
1582019
Consistent metagenome-derived metrics verify and delineate bacterial species boundaries
MR Olm, A Crits-Christoph, S Diamond, A Lavy, PB Matheus Carnevali, ...
Msystems 5 (1), 10.1128/msystems. 00731-19, 2020
1402020
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria
MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ...
Science advances 5 (12), eaax5727, 2019
1372019
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
1092017
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6, 1-12, 2018
842018
Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ...
The ISME journal 13 (6), 1618-1634, 2019
78*2019
Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome
SF Rahman, MR Olm, MJ Morowitz, JF Banfield
MSystems 3 (1), 10.1128/msystems. 00123-17, 2018
782018
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles
MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ...
Science 376 (6598), 1220-1223, 2022
722022
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7, 1-16, 2019
622019
Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles
CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ...
mBio 9 (2), e00441-18, 2018
58*2018
Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes
WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ...
Journal of virology 88 (5), 2461-2480, 2014
532014
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ...
Nature communications 10 (1), 463, 2019
522019
Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition
YC Lou, MR Olm, S Diamond, A Crits-Christoph, BA Firek, R Baker, ...
Cell Reports Medicine 2 (9), 2021
49*2021
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