|dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication|
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
|Measurement of bacterial replication rates in microbial communities|
CT Brown, MR Olm, BC Thomas, JF Banfield
Nature biotechnology 34 (12), 1256-1263, 2016
|Clades of huge phages from across Earth’s ecosystems|
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
|Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants|
A Crits-Christoph, RS Kantor, MR Olm, ON Whitney, B Al-Shayeb, YC Lou, ...
MBio 12 (1), 2021
|Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome|
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1-7, 2017
|inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains|
MR Olm, A Crits-Christoph, K Bouma-Gregson, BA Firek, MJ Morowitz, ...
Nature Biotechnology 39 (6), 727-736, 2021
|Megaphages infect Prevotella and variants are widespread in gut microbiomes|
AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ...
Nature microbiology 4 (4), 693-700, 2019
|Consistent metagenome-derived metrics verify and delineate bacterial species boundaries|
MR Olm, A Crits-Christoph, S Diamond, A Lavy, PB Matheus Carnevali, ...
Msystems 5 (1), e00731-19, 2020
|Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria|
MR Olm, N Bhattacharya, A Crits-Christoph, BA Firek, R Baker, YS Song, ...
Science advances 5 (12), eaax5727, 2019
|Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates|
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
|Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome|
SF Rahman, MR Olm, MJ Morowitz, JF Banfield
MSystems 3 (1), e00123-17, 2018
|Reporting guidelines for human microbiome research: the STORMS checklist|
C Mirzayi, A Renson, F Zohra, S Elsafoury, L Geistlinger, LJ Kasselman, ...
Nature medicine 27 (11), 1885-1892, 2021
|Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network|
K Bouma-Gregson, MR Olm, AJ Probst, K Anantharaman, ME Power, ...
The ISME journal 13 (6), 1618-1634, 2019
|The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms|
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6 (1), 1-12, 2018
|Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles|
CT Brown, W Xiong, MR Olm, BC Thomas, R Baker, B Firek, MJ Morowitz, ...
mBio 9 (2), e00441-18, 2018
|Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes|
WH Pope, KR Anders, M Baird, CA Bowman, MM Boyle, GW Broussard, ...
Journal of virology 88 (5), 2461-2480, 2014
|Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms|
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7 (1), 1-16, 2019
|Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria|
PB Matheus Carnevali, F Schulz, CJ Castelle, RS Kantor, PM Shih, ...
Nature communications 10 (1), 1-15, 2019
|Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow|
A Crits-Christoph, MR Olm, S Diamond, K Bouma-Gregson, JF Banfield
The ISME journal 14 (7), 1834-1846, 2020
|Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems|
RM Dedrick, TN Mavrich, WL Ng, JC Cervantes Reyes, MR Olm, RE Rush, ...
Molecular microbiology 101 (4), 625-644, 2016