Fábio Madeira
Fábio Madeira
Bioinformatics Software Engineer, PhD, EMBL-EBI
Bestätigte E-Mail-Adresse bei ebi.ac.uk - Startseite
Titel
Zitiert von
Zitiert von
Jahr
UniProt: a worldwide hub of protein knowledge
UniProt Consortium
Nucleic acids research 47 (D1), D506-D515, 2019
20222019
The EMBL-EBI search and sequence analysis tools APIs in 2019
F Madeira, YM Park, J Lee, N Buso, T Gur, N Madhusoodanan, ...
Nucleic acids research 47 (W1), W636-W641, 2019
12102019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
6612019
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides
F Madeira, M Tinti, G Murugesan, E Berrett, M Stafford, R Toth, C Cole, ...
Bioinformatics 31 (14), 2276-2283, 2015
992015
ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome
M Tinti, F Madeira, G Murugesan, G Hoxhaj, R Toth, C MacKintosh
Database 2014, 2014
432014
PDBe-KB: a community-driven resource for structural and functional annotations
Nucleic Acids Research 48 (D1), D344-D353, 2020
172020
Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services
F Madeira, N Madhusoodanan, J Lee, ARN Tivey, R Lopez
Current protocols in bioinformatics 66 (1), e74, 2019
132019
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
122018
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure
PV Troshin, JB Procter, A Sherstnev, DL Barton, F Madeira, GJ Barton
Bioinformatics 34 (11), 1939-1940, 2018
82018
The Dundee Resource for Sequence Analysis and Structure Prediction
SA MacGowan, F Madeira, T Britto‐Borges, M Warowny, A Drozdetskiy, ...
Protein Science 29 (1), 277-297, 2020
42020
PYCOEVOL - A Python Workflow to Study Protein-protein Coevolution
F Madeira, L Krippahl
BIOINFORMATICS 2012 - Proceedings of the International Conference on …, 2012
42012
Constraining Protein Docking with Coevolution Data for Medical Research
L Krippahl, F Madeira, P Barahona
AIME 2013 - Proceedings of the 14th Conference on Artificial Intelligence in …, 2013
32013
R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types
BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ...
bioRxiv, 2020
22020
Human missense variation is constrained by domain structure and highlights functional and pathogenic residues
SA MacGowan, F Madeira, T Britto-Borges, MS Schmittner, C Cole, ...
BioRxiv, 127050, 2017
12017
UniProt: the universal protein knowledgebase in 2021
A Bateman, MJ Martin, S Orchard, M Magrane, R Agivetova, S Ahmad, ...
Nucleic Acids Research, 2020
2020
Improving Protein Docking with Constraint Programming and Coevolution Data
L Krippahl, F Madeira
bioRxiv, 002329, 2014
2014
Improving Multiple Sequence Alignments with Constraint Programming and Local Search
M Correia, F Madeira, P Barahona, L Krippahl
WCB'11 - Prooceedings of the Workshop on Constraint Based Methods for …, 2011
2011
Estudos estruturais e funcionais da fenilalanina hidroxilase humana
F Madeira
Faculdade de Ciências e Tecnologia, UNL, 2010
2010
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