|Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study|
JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ...
The Lancet 381 (9877), 1551-1560, 2013
|Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis|
KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ...
Nature 514 (7523), 494-497, 2014
|Evolution and transmission of drug-resistant tuberculosis in a Russian population|
N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ...
Nature genetics 46 (3), 279-286, 2014
|Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium|
JM Bryant, DM Grogono, D Rodriguez-Rincon, I Everall, KP Brown, ...
Science 354 (6313), 751-757, 2016
|Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis|
CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ...
New England journal of medicine 369 (3), 290-292, 2013
|Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples|
AC Brown, JM Bryant, K Einer-Jensen, J Holdstock, DT Houniet, ...
Journal of clinical microbiology 53 (7), 2230-2237, 2015
|Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data|
JM Bryant, AC Schürch, H Van Deutekom, SR Harris, JL De Beer, ...
BMC infectious diseases 13 (1), 1-12, 2013
|Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study|
JM Bryant, SR Harris, J Parkhill, R Dawson, AH Diacon, P van Helden, ...
The Lancet Respiratory Medicine 1 (10), 786-792, 2013
|Genomic analysis of the causative agents of coccidiosis in domestic chickens|
AJ Reid, DP Blake, HR Ansari, K Billington, HP Browne, J Bryant, M Dunn, ...
Genome research 24 (10), 1676-1685, 2014
|The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex|
SD Bentley, I Comas, JM Bryant, D Walker, NH Smith, SR Harris, ...
PLoS Negl Trop Dis 6 (2), e1552, 2012
|Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences|
J Bryant, C Chewapreecha, SD Bentley
Future microbiology 7 (11), 1283-1296, 2012
|Direct whole-genome sequencing of sputum accurately identifies drug-resistant Mycobacterium tuberculosis faster than MGIT culture sequencing|
RM Doyle, C Burgess, R Williams, R Gorton, H Booth, J Brown, JM Bryant, ...
Journal of clinical microbiology 56 (8), 2018
|Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak|
ME Török, S Reuter, J Bryant, CU Köser, SV Stinchcombe, B Nazareth, ...
Journal of clinical microbiology 51 (2), 611-614, 2013
|Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination|
J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ...
Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019
|Detection of low frequency multi-drug resistance and novel putative maribavir resistance in immunocompromised pediatric patients with cytomegalovirus|
CJ Houldcroft, JM Bryant, DP Depledge, BK Margetts, J Simmonds, ...
Frontiers in microbiology 7, 1317, 2016
|Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis|
JM Bryant, VC Thibault, DGE Smith, J McLuckie, I Heron, IA Sevilla, F Biet, ...
BMC genomics 17 (1), 1-12, 2016
|Mycobacterium abscessus complex identification with matrix-assisted laser desorption ionization–time of flight mass spectrometry|
T Panagea, DH Pincus, D Grogono, M Jones, J Bryant, J Parkhill, ...
Journal of clinical microbiology 53 (7), 2355-2358, 2015
|Atypical AT skew in Firmicute genomes results from selection and not from mutation|
CA Charneski, F Honti, JM Bryant, LD Hurst, EJ Feil
PLoS Genet 7 (9), e1002283, 2011
|Novel single nucleotide polymorphism-based assay for genotyping Mycobacterium avium subsp. paratuberculosis|
C Leão, RJ Goldstone, J Bryant, J McLuckie, J Inácio, DGE Smith, ...
Journal of clinical microbiology 54 (3), 556-564, 2016
|Consequences of whiB7 (Rv3197A) mutations in Beijing genotype isolates of the Mycobacterium tuberculosis complex|
CU Köser, JM Bryant, J Parkhill, SJ Peacock
Antimicrobial agents and chemotherapy 57 (7), 3461-3461, 2013