Ugur Dogrusoz

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Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Ethan CeramiDirector, Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Michael Heuerdishevelled.orgVerified email at acm.org
Yevgeniy AntipinSema4Verified email at sema4.com
Boris RevaComputation Biology Center, Memorial Sloan-Kettering Cancer CenterVerified email at cbio.mskcc.org
Arthur GoldbergAssociate Professor of Genetics and Genomic Sciences, Institute for Genomics & Multiscale BiologyVerified email at mssm.edu
Bulent Arman AksoyMOMA TherapeuticsVerified email at aksoy.org
Emek DemirOHSUVerified email at ohsu.edu
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Nikolaus SchultzCenter for Molecular Oncology, Memorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
JianJiong GaoMemorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
Erik Larsson LekholmSahlgrenska Academy, University of GothenburgVerified email at cbio.mskcc.org
Rileen SinhaDana-Farber Cancer InstituteVerified email at broadinstitute.org
Gideon DresdnerETH ZürichVerified email at gideonite.com
Yichao SunMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Augustin LunaResearch Associate | Dept. of Data Science, Dana-Farber Cancer Institute, Harvard Medical SchoolVerified email at mail.nih.gov
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Huaiyu MiPreventive Medicine, University of Southern CaliforniaVerified email at usc.edu
Anatoly SorokinInstitute of Cell Biophysics RASVerified email at icb.psn.ru

Ugur Dogrusoz

Professor of Computer Engineering, Bilkent University, Ankara, Turkey

Verified email at cs.bilkent.edu.tr - Homepage

Graph Layout Information Visualization Big Data Analytics Bioinformatics Pathway Informatics


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The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... Cancer discovery 2 (5), 401-404, 2012	8291	2012
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross, SO Sumer, Y Sun, ... Science signaling 6 (269), pl1-pl1, 2013	7772	2013
Oncogenic signaling pathways in the cancer genome atlas F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ... Cell 173 (2), 321-337. e10, 2018	901	2018
The systems biology graphical notation N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	883	2009
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0	880
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	641	2010
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov 2: 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095, 2012	331	2012
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ... Bioinformatics 18 (7), 996-1003, 2002	198	2002
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095, 2012	190	2012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2 (5): 401–4 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...	104	2012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2 (5): 401–4. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095, 0	102
Software support for SBGN maps: SBGN-ML and LibSBGN MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ... Bioinformatics 28 (15), 2016-2021, 2012	89	2012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2012; 2: 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... C and D) BT-474 and MCF-7 cells proliferation assessment for 72, 0	88
A layout algorithm for undirected compound graphs U Dogrusoz, E Giral, A Cetintas, A Civril, E Demir Information Sciences 179 (7), 980-994, 2009	81	2009
An ontology for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ... Bioinformatics 20 (3), 349-356, 2004	77	2004
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...	76
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2012; 2 (5): 401–404. doi: 10.1158/2159-8290 E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0	74
Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization U Dogrusoz, EZ Erson, E Giral, E Demir, O Babur, A Cetintas, R Colak Bioinformatics 22 (3), 374-375, 2006	72	2006
Circular layout in the graph layout toolkit U Doğrusöz, B Madden, P Madden International Symposium on Graph Drawing, 92-100, 1996	68	1996
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497, 2020	63	2020

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