Noncoding somatic and inherited single-nucleotide variants converge to promote ESR1 expression in breast cancer SD Bailey, K Desai, KJ Kron, P Mazrooei, NA Sinnott-Armstrong, ... Nature genetics 48 (10), 1260-1266, 2016 | 94 | 2016 |
Noncoding mutations target cis-regulatory elements of the FOXA1 plexus in prostate cancer S Zhou, JR Hawley, F Soares, G Grillo, M Teng, SA Madani Tonekaboni, ... Nature communications 11 (1), 441, 2020 | 66 | 2020 |
Cistrome partitioning reveals convergence of somatic mutations and risk variants on master transcription regulators in primary prostate tumors P Mazrooei, KJ Kron, Y Zhu, S Zhou, G Grillo, T Mehdi, M Ahmed, ... Cancer Cell 36 (6), 674-689. e6, 2019 | 55 | 2019 |
CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer M Ahmed, F Soares, JH Xia, Y Yang, J Li, H Guo, P Su, Y Tian, HJ Lee, ... Nature communications 12 (1), 1781, 2021 | 36 | 2021 |
A noncoding single-nucleotide polymorphism at 8q24 drives IDH1-mutant glioma formation C Yanchus, KL Drucker, TM Kollmeyer, R Tsai, W Winick-Ng, M Liang, ... Science 378 (6615), 68-78, 2022 | 30 | 2022 |
Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks SAM Tonekaboni, P Mazrooei, V Kofia, B Haibe-Kains, M Lupien Genome research 29 (10), 1733-1743, 2019 | 27 | 2019 |
The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions J Dubois-Chevalier, V Dubois, H Dehondt, P Mazrooei, C Mazuy, ... Genome Research 27 (6), 985-996, 2017 | 24 | 2017 |
Organizing combinatorial transcription factor recruitment at cis-regulatory modules J Dubois-Chevalier, P Mazrooei, M Lupien, B Staels, P Lefebvre, ... Transcription 9 (4), 233-239, 2018 | 17 | 2018 |
Automating collusion detection in sequential games P Mazrooei, C Archibald, M Bowling Proceedings of the AAAI Conference on Artificial Intelligence 27 (1), 675-682, 2013 | 12 | 2013 |
CREAM: Clustering of genomic REgions analysis method SAM Tonekaboni, P Mazrooei, V Kofia, B Haibe-Kains, M Lupien BioRxiv, 222562, 2017 | 10 | 2017 |
Candidate cancer driver mutations in superenhancers and long-range chromatin interaction networks L Wadi, L Uusküla-Reimand, K Isaev, S Shuai, V Huang, M Liang, ... BioRxiv, 236802, 2017 | 8 | 2017 |
A note on the p-time algorithms for solving the maximum independent set problem NN Esfahani, P Mazrooei, K Mahdaviani, B Omoomi 2009 2nd Conference on Data Mining and Optimization, 65-70, 2009 | 6 | 2009 |
Mutations in Noncoding Cis-Regulatory Elements Reveal Cancer Driver Cistromes in Luminal Breast Cancer S El Ghamrasni, R Quevedo, J Hawley, P Mazrooei, Y Hanna, I Cirlan, ... Molecular Cancer Research 20 (1), 102-113, 2022 | 3 | 2022 |
Collusion detection in sequential games P Mazrooei | 2 | 2012 |
Proximity user identification using correlogram S Shahidi, P Mazrooei, NN Esfahani, M Saraee Intelligent Information Processing V: 6th IFIP TC 12 International …, 2010 | 2 | 2010 |
Su1747 REWIRING OF PATHWAY INTERACTIONS IN INFLAMED TISSUE OF ULCERATIVE COLITIS PATIENTS POINTS TO SPECIFIC LIGANDRECEPTOR ACTIVITIES ON NEUTROPHIL AND MACROPHAGE SUBSETS P Mazrooei, L Quintanilla, JM Gubatan, ST Eshghi, A Au-Yeung, ... Gastroenterology 166 (5), S-795, 2024 | | 2024 |
1137 ELEVATED OSM/OSMR EXPRESSION IN INFLAMED MUCOSAL TISSUE REFLECTS AN INFLAMMATORY CASCADE MEDIATED BY NEUTROPHIL: STROMAL INTERACTIONS ASSOCIATED WITH RESIDUAL DISEASE IN … S Eshghi, JA Hackney, O Onabajo, RA Ratsimandresy, M Keir, ... Gastroenterology 166 (5), S-264, 2024 | | 2024 |
Sa1894 SINGLE-CELL TRAJECTORY ANALYSIS IN MYELOID CELLS REVEALS CELLULAR SUBSTATE SPECIFIC INFORMATION ABOUT THE PATHOBIOLOGY OF ULCERATIVE COLITIS L Quintanilla, P Mazrooei, JM Gubatan, A Au-Yeung, D Holman, ... Gastroenterology 166 (5), S-568, 2024 | | 2024 |
399 MOLECULAR CHARACTERIZATION OF RESPONSE TO ETROLIZUMAB AND ANTI-TNF REVEALS TREATMENT REFRACTORY ULCERATIVE COLITIS IS ASSOCIATED WITH ABUNDANCE OF RESIDUAL NEUTROPHIL … S Eshghi, JM Gubatan, P Mazrooei, L Quintanilla, A Nguyen, A Au-Yeung, ... Gastroenterology 166 (5), S-92, 2024 | | 2024 |
Tu1746 SINGLE-CELL TRANSCRIPTOMICS REVEAL TISSUE NEUTROPHIL HETEROGENEITY AND NEUTROPHIL-INFLAMMATORY FIBROBLAST SIGNALING PATHWAYS ASSOCIATED WITH RESISTANCE TO APPROVED … JM Gubatan, ST Eshghi, P Mazrooei, L Quintanilla, RS Sojwal, ... Gastroenterology 166 (5), S-1404, 2024 | | 2024 |