| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium nature 447 (7146), 799, 2007 | 5466 | 2007 |
| Predicting subcellular localization of proteins based on their N-terminal amino acid sequence O Emanuelsson, H Nielsen, S Brunak, G Von Heijne Journal of molecular biology 300 (4), 1005-1016, 2000 | 4798 | 2000 |
| Locating proteins in the cell using TargetP, SignalP and related tools O Emanuelsson, S Brunak, G Von Heijne, H Nielsen Nature protocols 2 (4), 953-971, 2007 | 3484 | 2007 |
| ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites O Emanuelsson, H Nielsen, G Von Heijne Protein Science 8 (5), 978-984, 1999 | 2000 | 1999 |
| What is a gene, post-ENCODE? History and updated definition MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, ... Genome research 17 (6), 669-681, 2007 | 893 | 2007 |
| Sorting signals, N-terminal modifications and abundance of the chloroplast proteome B Zybailov, H Rutschow, G Friso, A Rudella, O Emanuelsson, Q Sun, ... PloS one 3 (4), e1994, 2008 | 691 | 2008 |
| Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction JB Peltier, O Emanuelsson, DE Kalume, J Ytterberg, G Friso, A Rudella, ... The Plant Cell 14 (1), 211-236, 2002 | 535 | 2002 |
| Prediction of organellar targeting signals O Emanuelsson, G von Heijne Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 1541 (1-2), 114-119, 2001 | 234 | 2001 |
| Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array-and sequencing-based technologies GM Euskirchen, JS Rozowsky, CL Wei, WH Lee, ZD Zhang, S Hartman, ... Genome research 17 (6), 898-909, 2007 | 226 | 2007 |
| Detecting sequence signals in targeting peptides using deep learning JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ... Life science alliance 2 (5), 2019 | 192 | 2019 |
| DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states EJ White, O Emanuelsson, D Scalzo, T Royce, S Kosak, EJ Oakeley, ... Proceedings of the National Academy of Sciences 101 (51), 17771-17776, 2004 | 155 | 2004 |
| In silico prediction of the peroxisomal proteome in fungi, plants and animals O Emanuelsson, A Elofsson, G Von Heijne, S Cristobal Journal of molecular biology 330 (2), 443-456, 2003 | 117 | 2003 |
| Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties Q Sun, O Emanuelsson, KJ van Wijk Plant physiology 135 (2), 723-734, 2004 | 87 | 2004 |
| Predicting protein subcellular localisation from amino acid sequence information O Emanuelsson Briefings in bioinformatics 3 (4), 361-376, 2002 | 87 | 2002 |
| Sequencing degraded RNA addressed by 3'tag counting B Sigurgeirsson, O Emanuelsson, J Lundeberg PloS one 9 (3), e91851, 2014 | 85 | 2014 |
| Design optimization methods for genomic DNA tiling arrays P Bertone, V Trifonov, JS Rozowsky, F Schubert, O Emanuelsson, J Karro, ... Genome research 16 (2), 271-281, 2006 | 66 | 2006 |
| Hereditary uveal melanoma: A report of a germline mutation in BAP1 V Höiom, D Edsgärd, H Helgadottir, H Eriksson, C All‐Ericsson, ... Genes, Chromosomes and Cancer 52 (4), 378-384, 2013 | 65 | 2013 |
| Analysis and prediction of mitochondrial targeting peptides O Emanuelsson, G von Heijne, G Schneider Methods in cell biology 65, 175-187, 2001 | 55 | 2001 |
| GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information D Edsgärd, MJ Iglesias, SJ Reilly, A Hamsten, P Tornvall, J Odeberg, ... Scientific reports 6 (1), 1-13, 2016 | 43 | 2016 |
| Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome O Emanuelsson, U Nagalakshmi, D Zheng, JS Rozowsky, AE Urban, J Du, ... Genome research 17 (6), 886-897, 2007 | 42 | 2007 |
