Mohamed Helmy
Mohamed Helmy
Senior Bioinformatics Specialist at Biotrans, A*STAR
Verified email at utoronto.ca - Homepage
TitleCited byYear
Potential biotechnological strategies for the cleanup of heavy metals and metalloids
KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher
Frontiers in plant science 7, 303, 2016
1302016
Next-generation sequence assembly: four stages of data processing and computational challenges
S El-Metwally, T Hamza, M Zakaria, M Helmy
PLoS computational biology 9 (12), 2013
1232013
OryzaPG-DB: rice proteome database based on shotgun proteogenomics
M Helmy, M Tomita, Y Ishihama
BMC plant biology 11 (1), 63, 2011
572011
Signaling flux redistribution at toll-like receptor pathway junctions
K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ...
PLoS One 3 (10), 2008
522008
Limited resources of genome sequencing in developing countries: challenges and solutions
M Helmy, M Awad, KA Mosa
Applied & translational genomics 9, 15-19, 2016
382016
Next generation sequencing technologies and challenges in sequence assembly
S El-Metwally, OM Ouda, M Helmy
Springer Science & Business, 2014
382014
Predicting novel features of toll-like receptor 3 signaling in macrophages
M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo
PLoS One 4 (3), 2009
322009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genes to Cells 17 (8), 633-644, 2012
272012
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics
M Helmy, M Tomita, Y Ishihama
Genes, Genomes and Genomics 6, 76-85, 2012
202012
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genome biology 11 (1), P17, 2010
182010
Ten simple rules for developing public biological databases
M Helmy, A Crits-Christoph, GD Bader
PLoS computational biology 12 (11), 2016
162016
A reference map of the human protein interactome
K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ...
bioRxiv, 605451, 2019
102019
The rice proteogenomics database oryzaPG-DB: development, expansion, and new features
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Frontiers in plant science 3, 65, 2012
102012
Integrated analysis of proteome, phosphotyrosine‐proteome, tyrosine‐kinome, and tyrosine‐phosphatome in acute myeloid leukemia
J Tong, M Helmy, FMG Cavalli, L Jin, J St‐Germain, R Karisch, P Taylor, ...
Proteomics 17 (6), 1600361, 2017
92017
Omics and system biology approaches in plant stress research
KA Mosa, A Ismail, M Helmy
Plant stress tolerance, 21-34, 2017
92017
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis
M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky
Computational biology and chemistry 71, 20-31, 2017
82017
Plant Stress Tolerance An Integrated Omics Approach
KA Mosa, A Ismail, M Helmy
Springer Nature, 2016
82016
First-and next-generations sequencing methods
S El-Metwally, OM Ouda, M Helmy
Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014
72014
Understanding the phytohormones biosynthetic pathways for developing engineered environmental stress-tolerant crops
S Soliman, A El-Keblawy, KA Mosa, M Helmy, SH Wani
Biotechnologies of Crop Improvement, Volume 2, 417-450, 2018
42018
FN-identify: novel restriction enzymes-based method for bacterial identification in absence of genome sequencing
M Awad, O Ouda, A El-Refy, FA El-Feky, KA Mosa, M Helmy
Advances in bioinformatics 2015, 2015
42015
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Articles 1–20