Mohamed Helmy
Mohamed Helmy
Senior Bioinformatics Specialist at SIFBI, A*STAR
Verified email at sifbi.a-star.edu.sg - Homepage
Title
Cited by
Cited by
Year
Potential biotechnological strategies for the cleanup of heavy metals and metalloids
KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher
Frontiers in Plant Science 7, 303, 2016
1722016
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
1622020
Next-generation sequence assembly: four stages of data processing and computational challenges
S El-Metwally, T Hamza, M Zakaria, M Helmy
PLoS Comput Biol 9 (12), e1003345, 2013
1362013
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
682020
OryzaPG-DB: rice proteome database based on shotgun proteogenomics
M Helmy, M Tomita, Y Ishihama
BMC plant biology 11 (1), 1-9, 2011
592011
Signaling flux redistribution at toll-like receptor pathway junctions
K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ...
PLoS One 3 (10), e3430, 2008
522008
Next generation sequencing technologies and challenges in sequence assembly
S El-Metwally, OM Ouda, M Helmy
Springer Nature, 2014
51*2014
New horizons in next-generation sequencing
S El-Metwally, OM Ouda, M Helmy
Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014
512014
Limited resources of genome sequencing in developing countries: challenges and solutions
M Helmy, M Awad, KA Mosa
Applied & translational genomics 9, 15-19, 2016
432016
A reference map of the human binary protein interactome
K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ...
Nature 580 (7803), 402-408, 2020
37*2020
Predicting novel features of toll-like receptor 3 signaling in macrophages
M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo
PLoS One 4 (3), e4661, 2009
322009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genes to Cells 17 (8), 633-644, 2012
272012
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics
M Helmy, M Tomita, Y Ishihama
Genes Genome Genomics 6, 76-85, 2012
212012
Ten simple rules for developing public biological databases
M Helmy, A Crits-Christoph, GD Bader
PLoS computational biology 12 (11), e1005128, 2016
202016
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genome biology 11 (1), 1-2, 2010
202010
Pathway and network analysis of more than 2500 whole cancer genomes
MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ...
Nature communications 11 (1), 1-17, 2020
132020
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis
M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky
Computational biology and chemistry 71, 20-31, 2017
132017
The rice proteogenomics database OryzaPG-DB: development, expansion, and new features
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Frontiers in plant science 3, 65, 2012
132012
Integrated analysis of proteome, phosphotyrosine‐proteome, tyrosine‐kinome, and tyrosine‐phosphatome in acute myeloid leukemia
J Tong, M Helmy, FMG Cavalli, L Jin, J St‐Germain, R Karisch, P Taylor, ...
Proteomics 17 (6), 1600361, 2017
122017
Omics and system biology approaches in plant stress research
KA Mosa, A Ismail, M Helmy
Plant stress tolerance, 21-34, 2017
112017
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Articles 1–20