Mohamed Helmy - Google Scholar

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	All	Since 2015
Citations	1041	888
h-index	14	13
i10-index	20	19

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Kareem A. MosaAssistant Professor, University of Sharjah (UAE) & Al-Azhar University (Egypt)Verified email at sharjah.ac.ae
Sara El-Sayed El-MetwallyAssistant Professor, Faculty of Computers and Information, Mansoura University, Egypt.Verified email at mans.edu.eg
Osama M. OudaAssociate Professor of Computer Science, Jouf UniversityVerified email at ju.edu.sa
Yasushi IshihamaProfessor, Grad Schl of Pharm Sci, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
Mohamed AwadDepartment of Comparative Development and Genetics. Max Planck Institute for Plant Breeding ResearchVerified email at azhar.edu.eg
Kumar SelvarajooBioTrans, A*STARVerified email at biotrans.a-star.edu.sg
Ahmed IsmailAssistant Professor of Bio & health informatics, Public health Department, College of AppliedVerified email at mu.edu.sa
Naoyuki SugiyamaGraduate School of Phermaceutical Sciences, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
Jun-ichiro InoueThe Institute of Medical Science, The University of TokyoVerified email at ims.u-tokyo.ac.jp
Om Parkash DhankherUniversity of Massachusetts AmherstVerified email at umass.edu
Kundan KumarBirla Institute of Technology & Science Pilani, K. K. Birla Goa CampusVerified email at goa.bits-pilani.ac.in
Ismail SaadounUniversity of SharjahVerified email at sharjah.ac.ae
The Prince Charles Hospital Staff Publ...The Prince Charles HospitalVerified email at health.qld.gov.au
fawzy El-FekyProfessor of Biotechnology and Genetics. Biotechnology Sept. , Al-Azhar universityVerified email at azhar.edu.eg
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Shizuo AkiraOsaka UniversityVerified email at biken.osaka-u.ac.jp
Alexander Crits-ChristophGraduate Student, UC BerkeleyVerified email at berkeley.edu
Michael F. (Mike) MoranProfessor of Molecular Genetics, University of TorontoVerified email at utoronto.ca
Michael TaylorTorontoVerified email at sickkids.ca
Florence M.G. CavalliInstitut CurieVerified email at curie.fr

Mohamed Helmy

Senior Bioinformatics Specialist at SIFBI, A*STAR

Verified email at sifbi.a-star.edu.sg - Homepage

Computational Biology/Bioinformatics Cancer Genomics Systems Biology Proteogenomics Personalized Medicine


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Potential biotechnological strategies for the cleanup of heavy metals and metalloids KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher Frontiers in Plant Science 7, 303, 2016	172	2016
Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020	162	2020
Next-generation sequence assembly: four stages of data processing and computational challenges S El-Metwally, T Hamza, M Zakaria, M Helmy PLoS Comput Biol 9 (12), e1003345, 2013	136	2013
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	68	2020
OryzaPG-DB: rice proteome database based on shotgun proteogenomics M Helmy, M Tomita, Y Ishihama BMC plant biology 11 (1), 1-9, 2011	59	2011
Signaling flux redistribution at toll-like receptor pathway junctions K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ... PLoS One 3 (10), e3430, 2008	52	2008
Next generation sequencing technologies and challenges in sequence assembly S El-Metwally, OM Ouda, M Helmy Springer Nature, 2014	51*	2014
New horizons in next-generation sequencing S El-Metwally, OM Ouda, M Helmy Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014	51	2014
Limited resources of genome sequencing in developing countries: challenges and solutions M Helmy, M Awad, KA Mosa Applied & translational genomics 9, 15-19, 2016	43	2016
A reference map of the human binary protein interactome K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ... Nature 580 (7803), 402-408, 2020	37*	2020
Predicting novel features of toll-like receptor 3 signaling in macrophages M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo PLoS One 4 (3), e4661, 2009	32	2009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics M Helmy, N Sugiyama, M Tomita, Y Ishihama Genes to Cells 17 (8), 633-644, 2012	27	2012
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics M Helmy, M Tomita, Y Ishihama Genes Genome Genomics 6, 76-85, 2012	21	2012
Ten simple rules for developing public biological databases M Helmy, A Crits-Christoph, GD Bader PLoS computational biology 12 (11), e1005128, 2016	20	2016
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing M Helmy, N Sugiyama, M Tomita, Y Ishihama Genome biology 11 (1), 1-2, 2010	20	2010
Pathway and network analysis of more than 2500 whole cancer genomes MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ... Nature communications 11 (1), 1-17, 2020	13	2020
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky Computational biology and chemistry 71, 20-31, 2017	13	2017
The rice proteogenomics database OryzaPG-DB: development, expansion, and new features M Helmy, N Sugiyama, M Tomita, Y Ishihama Frontiers in plant science 3, 65, 2012	13	2012
Integrated analysis of proteome, phosphotyrosine‐proteome, tyrosine‐kinome, and tyrosine‐phosphatome in acute myeloid leukemia J Tong, M Helmy, FMG Cavalli, L Jin, J St‐Germain, R Karisch, P Taylor, ... Proteomics 17 (6), 1600361, 2017	12	2017
Omics and system biology approaches in plant stress research KA Mosa, A Ismail, M Helmy Plant stress tolerance, 21-34, 2017	11	2017

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