Mohamed Helmy - Google Scholar Citations

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	All	Since 2015
Citations	645	496
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Sara El-Sayed El-MetwallyAssistant Professor, Faculty of Computers and Information, Mansoura University, Egypt.Verified email at mans.edu.eg
Kareem A. MosaAssistant Professor, University of Sharjah (UAE) & Al-Azhar University (Egypt)Verified email at sharjah.ac.ae
Osama M. OudaAssociate Professor of Computer Science, Jouf UniversityVerified email at ju.edu.sa
Yasushi IshihamaProfessor, Grad Schl of Pharm Sci, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
Kumar SelvarajooBioTrans, A*STARVerified email at biotrans.a-star.edu.sg
Mohamed AwadDepartment of Comparative Development and Genetics. Max Planck Institute for Plant Breeding ResearchVerified email at azhar.edu.eg
Naoyuki SugiyamaGraduate School of Phermaceutical Sciences, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
Jun-ichiro InoueThe Institute of Medical Science, The University of TokyoVerified email at ims.u-tokyo.ac.jp
Ahmed IsmailAssistant Professor of Bio & health informatics, Public health Department, College of AppliedVerified email at mu.edu.sa
Om Parkash DhankherUniversity of Massachusetts AmherstVerified email at umass.edu
Kundan KumarBirla Institute of Technology & Science Pilani, K. K. Birla Goa CampusVerified email at goa.bits-pilani.ac.in
Ismail SaadounUniversity of SharjahVerified email at sharjah.ac.ae
fawzy El-FekyProfessor of Biotechnology and Genetics. Biotechnology Sept. , Al-Azhar universityVerified email at azhar.edu.eg
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Shizuo AkiraOsaka UniversityVerified email at biken.osaka-u.ac.jp
Alexander Crits-ChristophGraduate Student, UC BerkeleyVerified email at berkeley.edu
Michael F. (Mike) MoranProfessor of Molecular Genetics, University of TorontoVerified email at utoronto.ca
Michael TaylorTorontoVerified email at sickkids.ca
Florence M.G. CavalliThe Hospital for Sick ChildrenVerified email at sickkids.ca
Benjamin G. NeelProfessor of Medicine, NYU School of Medicine; Director, Laura and Isaac Perlmutter Cancer CenterVerified email at nyulangone.org

Mohamed Helmy

Senior Bioinformatics Specialist at Biotrans, A*STAR

Verified email at utoronto.ca - Homepage

Computational Biology/Bioinformatics Cancer Genomics Systems Biology Proteogenomics Personalized Medicine


Title	Cited by	Year
Potential biotechnological strategies for the cleanup of heavy metals and metalloids KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher Frontiers in plant science 7, 303, 2016	130	2016
Next-generation sequence assembly: four stages of data processing and computational challenges S El-Metwally, T Hamza, M Zakaria, M Helmy PLoS computational biology 9 (12), 2013	123	2013
OryzaPG-DB: rice proteome database based on shotgun proteogenomics M Helmy, M Tomita, Y Ishihama BMC plant biology 11 (1), 63, 2011	57	2011
Signaling flux redistribution at toll-like receptor pathway junctions K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ... PLoS One 3 (10), 2008	52	2008
Limited resources of genome sequencing in developing countries: challenges and solutions M Helmy, M Awad, KA Mosa Applied & translational genomics 9, 15-19, 2016	38	2016
Next generation sequencing technologies and challenges in sequence assembly S El-Metwally, OM Ouda, M Helmy Springer Science & Business, 2014	38	2014
Predicting novel features of toll-like receptor 3 signaling in macrophages M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo PLoS One 4 (3), 2009	32	2009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics M Helmy, N Sugiyama, M Tomita, Y Ishihama Genes to Cells 17 (8), 633-644, 2012	27	2012
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics M Helmy, M Tomita, Y Ishihama Genes, Genomes and Genomics 6, 76-85, 2012	20	2012
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing M Helmy, N Sugiyama, M Tomita, Y Ishihama Genome biology 11 (1), P17, 2010	18	2010
Ten simple rules for developing public biological databases M Helmy, A Crits-Christoph, GD Bader PLoS computational biology 12 (11), 2016	16	2016
A reference map of the human protein interactome K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ... bioRxiv, 605451, 2019	10	2019
The rice proteogenomics database oryzaPG-DB: development, expansion, and new features M Helmy, N Sugiyama, M Tomita, Y Ishihama Frontiers in plant science 3, 65, 2012	10	2012
Integrated analysis of proteome, phosphotyrosine‐proteome, tyrosine‐kinome, and tyrosine‐phosphatome in acute myeloid leukemia J Tong, M Helmy, FMG Cavalli, L Jin, J St‐Germain, R Karisch, P Taylor, ... Proteomics 17 (6), 1600361, 2017	9	2017
Omics and system biology approaches in plant stress research KA Mosa, A Ismail, M Helmy Plant stress tolerance, 21-34, 2017	9	2017
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky Computational biology and chemistry 71, 20-31, 2017	8	2017
Plant Stress Tolerance An Integrated Omics Approach KA Mosa, A Ismail, M Helmy Springer Nature, 2016	8	2016
First-and next-generations sequencing methods S El-Metwally, OM Ouda, M Helmy Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014	7	2014
Understanding the phytohormones biosynthetic pathways for developing engineered environmental stress-tolerant crops S Soliman, A El-Keblawy, KA Mosa, M Helmy, SH Wani Biotechnologies of Crop Improvement, Volume 2, 417-450, 2018	4	2018
FN-identify: novel restriction enzymes-based method for bacterial identification in absence of genome sequencing M Awad, O Ouda, A El-Refy, FA El-Feky, KA Mosa, M Helmy Advances in bioinformatics 2015, 2015	4	2015

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