Benjamin Schubert
Cited by
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OptiType: precision HLA typing from next-generation sequencing data
A Szolek, B Schubert, C Mohr, M Sturm, M Feldhahn, O Kohlbacher
Bioinformatics 30 (23), 3310-3316, 2014
The EVcouplings Python framework for coevolutionary sequence analysis
TA Hopf, AG Green, B Schubert, S Mersmann, CPI Schärfe, JB Ingraham, ...
Bioinformatics 35 (9), 1582-1584, 2019
Designing string-of-beads vaccines with optimal spacers
B Schubert, O Kohlbacher
Genome medicine 8 (1), 1-10, 2016
Induction of neoantigen-reactive T cells from healthy donors
M Ali, Z Foldvari, E Giannakopoulou, ML Böschen, E Strønen, W Yang, ...
Nature protocols 14 (6), 1926-1943, 2019
Evaluation of peptide selection approaches for epitope‐based vaccine design
B Schubert, O Lund, M Nielsen
Tissue Antigens 82 (4), 243-251, 2013
FRED 2: an immunoinformatics framework for Python
B Schubert, M Walzer, HP Brachvogel, A Szolek, C Mohr, O Kohlbacher
Bioinformatics 32 (13), 2044-2046, 2016
EpiToolKit—a web-based workbench for vaccine design
B Schubert, HP Brachvogel, C Jürges, O Kohlbacher
Bioinformatics 31 (13), 2211-2213, 2015
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings
B Schubert, R Maddamsetti, J Nyman, MR Farhat, DS Marks
Nature microbiology 4 (2), 328-338, 2019
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides
P Domingo-Calap, B Schubert, M Joly, M Solis, M Untrau, R Carapito, ...
PLoS pathogens 14 (10), e1007368, 2018
Predicting antigen specificity of single T cells based on TCR CDR 3 regions
DS Fischer, Y Wu, B Schubert, FJ Theis
Molecular systems biology 16 (8), e9416, 2020
Population-specific design of de-immunized protein biotherapeutics
B Schubert, C Schärfe, P Dönnes, T Hopf, D Marks, O Kohlbacher
PLoS computational biology 14 (3), e1005983, 2018
miHA-Match: computational detection of tissue-specific minor histocompatibility antigens
M Feldhahn, P Dönnes, B Schubert, K Schilbach, HG Rammensee, ...
Journal of immunological methods 386 (1-2), 94-100, 2012
ImmunoNodes–graphical development of complex immunoinformatics workflows
B Schubert, L de la Garza, C Mohr, M Walzer, O Kohlbacher
BMC bioinformatics 18 (1), 1-7, 2017
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification
L Schneider, T Kehl, K Thedinga, NL Grammes, C Backes, C Mohr, ...
Bioinformatics 35 (24), 5171-5181, 2019
Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings
B Schubert, R Maddamsetti, J Nyman, MR Farhat, DS Marks
bioRxiv, 325993, 2018
Ws-pgrade/guse-based science gateways in teaching
SD Olabarriaga, A Benabdelkader, MWA Caan, MM Jaghoori, J Krüger, ...
Science Gateways for Distributed Computing Infrastructures, 223-234, 2014
Joint epitope selection and spacer design for string-of-beads vaccines
E Dorigatti, B Schubert
Bioinformatics 36 (Supplement_2), i643-i650, 2020
Graph-theoretical formulation of the generalized epitope-based vaccine design problem
E Dorigatti, B Schubert
PLoS computational biology 16 (10), e1008237, 2020
Early risk stratification in preterm infants with Bronchopulmonary Dysplasia via pulmonary arterial flow measurements in MRI
F Häfner, A Kindt, K Förster, C Von Törne, SM Hauck, B Schubert, ...
European Respiratory Journal 56 (suppl 64), 2020
scCODA: A Bayesian model for compositional single-cell data analysis
M Buettner, J Ostner, CL Mueller, FJ Theis, B Schubert
bioRxiv, 2020
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