Todd Lowe
Todd Lowe
Professor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, University
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Zitiert von
Zitiert von
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Macmillan Publishers Ltd., 2001
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul, HL Koo, J Jenkins, M Rizzo, T Rooney, LJ Tallon, T Feldblyum, ...
nature 408 (6814), 796-815, 2000
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
TM Lowe, SR Eddy
Nucleic acids research 25 (5), 955-964, 1997
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner, AN Brooks, TM Lowe
Nucleic acids research 33 (suppl_2), W686-W689, 2005
dbEST—database for “expressed sequence tags”
MS Boguski, TMJ Lowe, CM Tolstoshev
Nature genetics 4 (4), 332-333, 1993
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
TM Lowe, PP Chan
Nucleic acids research 44 (W1), W54-W57, 2016
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
PP Chan, TM Lowe
Nucleic acids research 37 (suppl_1), D93-D97, 2009
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
CB Walker, JR De La Torre, MG Klotz, H Urakawa, N Pinel, DJ Arp, ...
Proceedings of the National Academy of Sciences 107 (19), 8818-8823, 2010
General concepts for PCR primer design
CW Dieffenbach, TM Lowe, GS Dveksler
PCR methods appl 3 (3), S30-S37, 1993
A computational screen for methylation guide snoRNAs in yeast
TM Lowe, SR Eddy
Science 283 (5405), 1168-1171, 1999
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
PP Chan, TM Lowe
Nucleic acids research 44 (D1), D184-D189, 2016
tRNAscan-SE: searching for tRNA genes in genomic sequences
PP Chan, TM Lowe
Gene prediction, 1-14, 2019
Homologs of small nucleolar RNAs in Archaea
AD Omer, TM Lowe, AG Russell, H Ebhardt, SR Eddy, PP Dennis
Science 288 (5465), 517-522, 2000
A computer program for selection of oligonucleotide primers for polymerase chain reactions
T Lowe, J Sharefkin, SQ Yang, CW Dieffenbach
Nucleic Acids Research 18 (7), 1757-1761, 1990
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995-1001, 2010
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments
AE Cozen, E Quartley, AD Holmes, E Hrabeta-Robinson, EM Phizicky, ...
Nature methods 12 (9), 879-884, 2015
The complete genome sequence of Haloferax volcanii DS2, a model archaeon
AL Hartman, C Norais, JH Badger, S Delmas, S Haldenby, R Madupu, ...
PloS one 5 (3), e9605, 2010
The Complete Genome Sequence of Helicobacter pylori Strain G27
DA Baltrus, MR Amieva, A Covacci, TM Lowe, DS Merrell, KM Ottemann, ...
Journal of bacteriology 191 (1), 447-448, 2009
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