| MetaEuk–sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics E Levy Karin, M Mirdita, J Soeding Microbiome, 2020 | 149 | 2020 |
| Fast and sensitive taxonomic assignment to metagenomic contigs M Mirdita, M Steinegger, F Breitwieser, J Söding, E Levy Karin Bioinformatics 37 (18), 3029-3031, 2021 | 123 | 2021 |
| SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts R Zhang, M Mirdita, E Levy Karin, C Norroy, C Galiez, J Söding Bioinformatics 37 (19), 3364-3366, 2021 | 54 | 2021 |
| An integrated model of phenotypic trait changes and site-specific sequence evolution. E Levy Karin, S Wicke, T Pupko, I Mayrose Systematic biology, 2017 | 36 | 2017 |
| CoPAP: Coevolution of Presence–Absence Patterns O Cohen, H Ashkenazy, E Levy Karin, D Burstein, T Pupko Nucleic acids research 41 (W1), W232-W237, 2013 | 30 | 2013 |
| Multiple sequence alignment averaging improves phylogeny reconstruction H Ashkenazy, I Sela, E Levy Karin, G Landan, T Pupko Systematic biology 68 (1), 117-130, 2019 | 29 | 2019 |
| Alignment errors strongly impact likelihood-based tests for comparing topologies E Levy Karin, E Susko, T Pupko Molecular biology and evolution 31 (11), 3057-3067, 2014 | 26 | 2014 |
| The Cytoskeleton of Parabasalian Parasites Comprises Proteins that Share Properties Common to Intermediate Filament Proteins H Preisner, E Levy Karin, G Poschmann, K Stühler, T Pupko, SB Gould Protist 167 (6), 526-543, 2016 | 25 | 2016 |
| Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales” A Mushegian, E Levy Karin, T Pupko Virology 513, 114-128, 2018 | 21 | 2018 |
| The prevalence and evolutionary conservation of inverted repeats in proteobacteria B Lavi, E Levy Karin, T Pupko, E Hazkani-Covo Genome Biology and Evolution 10 (3), 918-927, 2018 | 20 | 2018 |
| A simulation-based approach to statistical alignment E Levy Karin, H Ashkenazy, J Hein, T Pupko Systematic biology 68 (2), 252-266, 2019 | 11 | 2019 |
| TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites E Levy Karin, H Ashkenazy, S Wicke, T Pupko, I Mayrose Nucleic Acids Research, 2017 | 8 | 2017 |
| Inferring rates and length-distributions of indels using approximate Bayesian computation. E Levy Karin, D Shkedy, H Ashkenazy, RA Cartwright, T Pupko Genome biology and evolution, 2017 | 8 | 2017 |
| A codon model for associating phenotypic traits with altered selective patterns of sequence evolution K Halabi, E Levy Karin, L Guéguen, I Mayrose Systematic Biology 70 (3), 608-622, 2021 | 7 | 2021 |
| Inferring indel parameters using a simulation-based approach E Levy Karin, A Rabin, H Ashkenazy, D Shkedy, O Avram, RA Cartwright, ... Genome biology and evolution 7 (12), 3226-3238, 2015 | 6 | 2015 |
| Petabase-Scale Homology Search for Structure Prediction S Lee, G Kim, E Levy Karin, M Mirdita, S Park, R Chikhi, A Babaian, ... Cold Spring Harbor Perspectives in Biology, a041465, 2024 | 5* | 2024 |
| SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm H Ashkenazy, E Levy Karin, Z Mertens, RA Cartwright, T Pupko Nucleic Acids Research, 2017 | 4 | 2017 |
| Easy and accurate protein structure prediction using ColabFold G Kim, S Lee, EL Karin, H Kim, Y Moriwaki, S Ovchinnikov, M Steinegger, ... | 3 | 2023 |
| RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton V Raghavan, G Eichele, O Larink, E Levy Karin, J Söding NAR Genomics and Bioinformatics 5 (1), lqad007, 2023 | 1 | 2023 |
| Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer W Kim, M Mirdita, E Levy Karin, CLM Gilchrist, H Schweke, J Soeding, ... bioRxiv, 2024.04. 14.589414, 2024 | | 2024 |
Milot MirditaSeoul National UniversityVerified email at snu.ac.kr
