Matthew Hall
Matthew Hall
Bestätigte E-Mail-Adresse bei bdi.ox.ac.uk - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Patients’, clinicians’ and the research communities’ priorities for treatment research: there is an important mismatch
S Crowe, M Fenton, M Hall, K Cowan, I Chalmers
Research involvement and engagement 1 (1), 1-10, 2015
1742015
PHYLOSCANNER: inferring transmission from within-and between-host pathogen genetic diversity
C Wymant, M Hall, O Ratmann, D Bonsall, T Golubchik, M de Cesare, ...
Molecular biology and evolution 35 (3), 719-733, 2018
722018
Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set
M Hall, M Woolhouse, A Rambaut
PLOS Computational Biology 11 (12), e1004613, 2015
692015
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
512017
Revealing the micro-scale signature of endemic zoonotic disease transmission in an African urban setting
H Bourhy, E Nakouné, M Hall, Nouvellet, Pierre, A Lepelletier, C Talbi, ...
PLOS Pathogens 12 (4), e1005525, 2016
432016
Reconstructing geographical movements and host species transitions of foot-and-mouth disease virus serotype SAT 2
MD Hall, NJ Knowles, J Wadsworth, A Rambaut, MEJ Woolhouse
MBio 4 (5), 2013
412013
The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study
MD Hall, MEJ Woolhouse, A Rambaut
Virus Evolution 2 (1), vew003, 2016
402016
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe
F Blanquart, C Wymant, M Cornelissen, A Gall, M Bakker, D Bezemer, ...
PLoS biology 15 (6), e2001855, 2017
352017
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver
C Wymant, F Blanquart, T Golubchik, A Gall, M Bakker, D Bezemer, ...
Virus evolution 4 (1), vey007, 2018
272018
Phylogeography of Rift Valley Fever virus in Africa and the Arabian Peninsula
S Abdallah M, A Townsend Peterson, M Hall
PLOS Neglected Tropical Diseases 11 (1), e0005226, 2017
252017
Spatiotemporal analysis of the genetic diversity of seal influenza A (H10N7) virus, northwestern Europe
R Bodewes, S Zohari, JS Krog, MD Hall, TC Harder, TM Bestebroer, ...
Journal of virology 90 (9), 4269-4277, 2016
242016
Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
O Ratmann, MK Grabowski, M Hall, T Golubchik, C Wymant, ...
Nature communications 10 (1), 1-13, 2019
222019
Using genomics data to reconstruct transmission trees during disease outbreaks
MD Hall, MEJ Woolhouse, A Rambaut
Revue scientifique et technique (International Office of Epizootics) 35 (1), 287, 2016
162016
Phylogenetic methods inconsistently predict the direction of HIV transmission among heterosexual pairs in the HPTN 052 cohort
R Rose, M Hall, AD Redd, S Lamers, AE Barbier, SF Porcella, ...
The Journal of infectious diseases 220 (9), 1406-1413, 2019
142019
Modelling the impact of co-circulating low pathogenic avian influenza viruses on epidemics of highly pathogenic avian influenza in poultry
S Nickbakhsh, MD Hall, I Dorigatti, SJ Lycett, P Mulatti, I Monne, A Fusaro, ...
Epidemics 17, 27-34, 2016
142016
Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda
O Ratmann, J Kagaayi, M Hall, T Golubchick, G Kigozi, X Xi, C Wymant, ...
The Lancet HIV 7 (3), e173-e183, 2020
112020
Transmission trees on a known pathogen phylogeny: Enumeration and sampling
MD Hall, C Colijn
Molecular biology and evolution 36 (6), 1333-1343, 2019
82019
The evolution and phylodynamics of serotype A and SAT2 foot-and-mouth disease viruses in endemic regions of Africa
S Lycett, VN Tanya, M Hall, DP King, S Mazeri, V Mioulet, NJ Knowles, ...
Scientific reports 9 (1), 1-11, 2019
82019
Improved characterisation of MRSA transmission using within-host bacterial sequence diversity
MD Hall, MTG Holden, P Srisomang, W Mahavanakul, V Wuthiekanun, ...
Elife 8, e46402, 2019
62019
The evolution of subtype B HIV-1 tat in the Netherlands during 1985–2012
AC van der Kuyl, M Vink, F Zorgdrager, M Bakker, C Wymant, M Hall, ...
Virus research 250, 51-64, 2018
52018
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