Clemens Wrzodek
Clemens Wrzodek
Roche Innovation Center Penzberg. Previously: Center for Bioinformatics, Tübingen, Germany
Verified email at
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Cited by
Path2Models: large-scale generation of computational models from biochemical pathway maps
F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ...
BMC systems biology 7 (1), 1-19, 2013
JSBML: a flexible Java library for working with SBML
A Dräger, N Rodriguez, M Dumousseau, A Dörr, C Wrzodek, N Le Novère, ...
Bioinformatics 27 (15), 2167-2168, 2011
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
C Wrzodek, A Dräger, A Zell
Bioinformatics 27 (16), 2314-2315, 2011
Identification of Dlk1-Dio3 Imprinted Gene Cluster Noncoding RNAs as Novel Candidate Biomarkers for Liver Tumor Promotion
H Lempiäinen, P Couttet, F Bolognani, A Mueller, V Dubost, R Luisier, ...
Toxicological sciences 131 (2), 375-386, 2013
Precise generation of systems biology models from KEGG pathways
C Wrzodek, F Büchel, M Ruff, A Dräger, A Zell
BMC systems biology 7 (1), 1-12, 2013
Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software
J Eichner, L Rosenbaum, C Wrzodek, HU Häring, A Zell, R Lehmann
Journal of Chromatography B 966, 77-82, 2014
JSBML 1.0: providing a smorgasbord of options to encode systems biology models
N Rodriguez, A Thomas, L Watanabe, IY Vazirabad, V Kofia, HF Gómez, ...
Bioinformatics 31 (20), 3383-3386, 2015
InCroMAP: integrated analysis of cross-platform microarray and pathway data
C Wrzodek, J Eichner, F Büchel, A Zell
Bioinformatics 29 (4), 506-508, 2013
Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands
C Wrzodek, F Büchel, G Hinselmann, J Eichner, F Mittag, A Zell
PloS one 7 (4), e35327, 2012
Ha‐ras and β‐catenin oncoproteins orchestrate metabolic programs in mouse liver tumors
EB Unterberger, J Eichner, C Wrzodek, H Lempiäinen, R Luisier, ...
International journal of cancer 135 (7), 1574-1585, 2014
Qualitative translation of relations from BioPAX to SBML qual
F Büchel, C Wrzodek, F Mittag, A Dräger, J Eichner, N Rodriguez, ...
Bioinformatics 28 (20), 2648-2653, 2012
Inferring statin-induced gene regulatory relationships in primary human hepatocytes
A Schröder, J Wollnik, C Wrzodek, A Dräger, M Bonin, O Burk, M Thomas, ...
Bioinformatics 27 (18), 2473-2477, 2011
ModuleMaster: a new tool to decipher transcriptional regulatory networks
C Wrzodek, A Schröder, A Dräger, D Wanke, KW Berendzen, M Kronfeld, ...
Biosystems 99 (1), 79-81, 2010
Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver
J Eichner, C Wrzodek, M Römer, H Ellinger-Ziegelbauer, A Zell
PloS one 9 (5), e97678, 2014
Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein
F Büchel, S Saliger, A Dräger, S Hoffmann, C Wrzodek, A Zell, PJ Kahle
BMC neuroscience 14 (1), 1-12, 2013
A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection
J Eichner, N Kossler, C Wrzodek, A Kalkuhl, D Bach Toft, N Ostenfeldt, ...
PLoS One 8 (9), e73938, 2013
ZBIT bioinformatics toolbox: a web-platform for systems biology and expression data analysis
M Römer, J Eichner, A Dräger, C Wrzodek, F Wrzodek, A Zell
PloS one 11 (2), e0149263, 2016
Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes
F Büchel, F Mittag, C Wrzodek, A Zell, T Gasser, M Sharma
PLoS One 8 (10), e78577, 2013
TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors
J Eichner, F Topf, A Dräger, C Wrzodek, D Wanke, A Zell
PloS one 8 (12), e82238, 2013
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