| Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'neill, H Zare, A Jalali, ... Bioinformatics 28 (7), 1009-1016, 2012 | 96 | 2012 |
| RchyOptimyx: cellular hierarchy optimization for flow cytometry N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ... Cytometry Part A 81 (12), 1022-1030, 2012 | 69 | 2012 |
| Enhanced flowType/RchyOptimyx: a bioconductor pipeline for discovery in high-dimensional cytometry data K O’Neill, A Jalali, N Aghaeepour, H Hoos, RR Brinkman Bioinformatics 30 (9), 1329-1330, 2014 | 42 | 2014 |
| Fairlearn: Assessing and Improving Fairness of AI Systems MM Hilde Weerts, Miroslav Dudík, Richard Edgar, Adrin Jalali, Roman Lutz JMLR 24 (257), 1-8, 2023 | 22* | 2023 |
| flowCL: ontology-based cell population labelling in flow cytometry M Courtot, J Meskas, AD Diehl, R Droumeva, R Gottardo, A Jalali, ... Bioinformatics 31 (8), 1337-1339, 2015 | 21 | 2015 |
| Weighted elastic net for unsupervised domain adaptation with application to age prediction from DNA methylation data L Handl, A Jalali, M Scherer, R Eggeling, N Pfeifer Bioinformatics 35 (14), i154-i163, 2019 | 15 | 2019 |
| Interpretable per case weighted ensemble method for cancer associations A Jalali, N Pfeifer BMC genomics 17, 1-10, 2016 | 10 | 2016 |
| Cancerouspdomains: comprehensive analysis of cancer type-specific recurrent somatic mutations in proteins and domains S Hashemi, A Nowzari Dalini, A Jalali, AM Banaei-Moghaddam, ... BMC bioinformatics 18, 1-18, 2017 | 9 | 2017 |
| Fairness in AI Systems: From Social Context to Practice using Fairlearn T Gandhi, M Nandi, M Dudık, H Wallach, M Madaio, H Weerts, A Jalali, ... Tutorial presented at the 20th annual Scientific Computing with Python …, 2021 | 2 | 2021 |
| RchyOptimyx: gating hierarchy optimization for flow cytometry N Aghaeepour, A Jalali | 2 | 2013 |
| Team Description of SOS 2005 B Behsaz, A Jalali, H Janzadeh, MR Jouyandeh, F Molazem, A Rahimi, ... Proceedings of RoboCup, 2005 | 1 | 2005 |
| ADMM-based full-waveform inversion of ground-penetrating radar data A Jalali, HS Aghamiry, A Gholami Second International Meeting for Applied Geoscience & Energy, 2030-2034, 2022 | | 2022 |
| Partially blind domain adaptation for age prediction from DNA methylation data L Handl, A Jalali, M Scherer, N Pfeifer arXiv preprint arXiv:1612.06650, 2016 | | 2016 |
| Package ‘flowType’ N Aghaeepour, K O'Neill, A Jalali, MN Aghaeepour, I Biobase, LT Rcpp | | |
| Analyzing How Protein Interaction Networks Improve Classification Performance in Gene Expression Data Analysis A Jalali, N Pfeifer | | |
| Package ‘RchyOptimyx’ A Jalali, N Aghaeepour, MA Jalali, I Rgraphviz | | |
| Cytometry-Ontology Framework A Jalali, M Courtot, R Gottardo, R Scheuermann, R Brinkman | | |
| AUTRescue Team Strategy Description ME Shiri, A Jalali, M Jooyandeh, NR Tavana, M Behzadi | | |
| Rayan Team Strategy Description M Tashakori, A Jalali, M Jooyandeh, A Gholami, AB Nejad, K Ghasemloo, ... | | |
