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Haidong Lan
Haidong Lan
Taichi Graphics
Verified email at taichi.graphics
Title
Cited by
Cited by
Year
Computing platforms for big biological data analytics: perspectives and challenges
Z Yin, H Lan, G Tan, M Lu, AV Vasilakos, W Liu
Computational and structural biotechnology journal 15, 403-411, 2017
602017
End-to-end {I/O} Monitoring on a Leading Supercomputer
B Yang, X Ji, X Ma, X Wang, T Zhang, X Zhu, N El-Sayed, H Lan, Y Yang, ...
16th USENIX Symposium on Networked Systems Design and Implementation (NSDI …, 2019
352019
Xsw: Accelerating biological database search on xeon phi
L Wang, Y Chan, X Duan, H Lan, X Meng, W Liu
2014 IEEE International Parallel & Distributed Processing Symposium …, 2014
342014
Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures
H Lan, W Liu, B Schmidt, B Wang
2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2015
162015
Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters
H Lan, Y Chan, K Xu, B Schmidt, S Peng, W Liu
BMC bioinformatics 17 (9), 11-23, 2016
152016
FeatherCNN: Fast inference computation with TensorGEMM on ARM architectures
H Lan, J Meng, C Hundt, B Schmidt, M Deng, X Wang, W Liu, Y Qiao, ...
IEEE Transactions on Parallel and Distributed Systems 31 (3), 580-594, 2019
142019
SWhybrid: a hybrid-parallel framework for large-scale protein sequence database search
H Lan, W Liu, Y Liu, B Schmidt
2017 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2017
142017
When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14—(tFold for CASP14 contact prediction)
T Shen, J Wu, H Lan, L Zheng, J Pei, S Wang, W Liu, J Huang
Proteins: Structure, Function, and Bioinformatics 89 (12), 1901-1910, 2021
132021
BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures
J Zhang, H Lan, Y Chan, Y Shang, B Schmidt, W Liu
Bioinformatics 35 (13), 2306-2308, 2019
102019
PUNAS: A parallel ungapped-alignment-featured seed verification algorithm for next-generation sequencing read alignment
Y Chan, K Xu, H Lan, W Liu, Y Liu, B Schmidt
2017 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2017
72017
Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term
L Zheng, J Meng, K Jiang, H Lan, Z Wang, M Lin, W Li, H Guo, Y Wei, ...
Briefings in Bioinformatics 23 (3), bbac051, 2022
52022
SE (3)-Equivariant Energy-based Models for End-to-End Protein Folding
J Wu, T Shen, H Lan, Y Bian, J Huang
bioRxiv, 2021
52021
Myphi: efficient levenshtein distance computation on xeon phi based architectures
Y Chan, K Xu, H Lan, B Schmidt, S Peng, W Liu
Current Bioinformatics 13 (5), 479-486, 2018
42018
EBM-Fold: fully-differentiable protein folding powered by energy-based models
J Wu, S Luo, T Shen, H Lan, S Wang, J Huang
arXiv preprint arXiv:2105.04771, 2021
32021
RabbitQC: high-speed scalable quality control for sequencing data
Z Yin, H Zhang, M Liu, W Zhang, H Song, H Lan, Y Wei, B Niu, B Schmidt, ...
Bioinformatics 37 (4), 573-574, 2021
32021
tFold-TR: Combining Deep Learning Enhanced Hybrid Potential Energy for Template-Based Modeling Structure Refinement
L Zheng, H Lan, T Shen, J Wu, S Wang, W Liu, J Huang
arXiv preprint arXiv:2105.04350, 2021
12021
XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi
Q Zheng, H Lan, W Liu
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
12014
Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning
J Meng, C Zhuang, P Chen, M Wahib, B Schmidt, X Wang, H Lan, D Wu, ...
IEEE Transactions on Parallel and Distributed Systems 33 (11), 2885-2899, 2022
2022
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