J. Christopher Bare
J. Christopher Bare
Senior Software Engineer
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Zitiert von
Zitiert von
Jahr
The mPower study, Parkinson disease mobile data collected using ResearchKit
ADT Brian M Bot, Christine Suver, Elias Chaibub Neto, Michael Kellen, Arno ...
Nature Scientific Data 3, 2016
329*2016
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3202007
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2202015
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
1432009
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
1122017
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
932015
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease
GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, ...
Alzheimer's & Dementia 12 (6), 645-653, 2016
682016
Parallel evolution of transcriptome architecture during genome reorganization
SH Yoon, DJ Reiss, JC Bare, D Tenenbaum, M Pan, J Slagel, RL Moritz, ...
Genome research 21 (11), 1892-1904, 2011
582011
Integration and visualization of systems biology data in context of the genome
JC Bare, T Koide, DJ Reiss, D Tenenbaum, NS Baliga
BMC bioinformatics 11 (1), 1-8, 2010
452010
Niche adaptation by expansion and reprogramming of general transcription factors
S Turkarslan, DJ Reiss, G Gibbins, WL Su, M Pan, JC Bare, CL Plaisier, ...
Molecular systems biology 7 (1), 554, 2011
422011
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
JC Bare, PT Shannon, AK Schmid, NS Baliga
BMC bioinformatics 8 (1), 1-12, 2007
412007
Global optimization of somatic variant identification in cancer genomes with a global community challenge
PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ...
Nature genetics 46 (4), 318-319, 2014
392014
miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling
CL Plaisier, JC Bare, NS Baliga
Nucleic acids research 39 (suppl_2), W125-W131, 2011
322011
Attestation and trusted computing
JC Bare
University of Washington, Washington, 2006
282006
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection
AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ...
Genome biology 19 (1), 1-15, 2018
262018
Network portal: a database for storage, analysis and visualization of biological networks
S Turkarslan, EJ Wurtmann, WJ Wu, N Jiang, JC Bare, K Foley, DJ Reiss, ...
Nucleic acids research 42 (D1), D184-D190, 2014
232014
DREAMTools: a Python package for scoring collaborative challenges
T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ...
F1000Research 4, 2015
212015
Simulation studies as designed experiments: the comparison of penalized regression models in the “large p, small n” setting
EC Neto, JC Bare, AA Margolin
PloS one 9 (10), e107957, 2014
102014
Germline contamination and leakage in whole genome somatic single nucleotide variant detection
DH Sendorek, C Caloian, K Ellrott, JC Bare, TN Yamaguchi, AD Ewing, ...
BMC bioinformatics 19 (1), 1-9, 2018
42018
Architecture for interoperable software in biology
JC Bare, NS Baliga
Briefings in bioinformatics 15 (4), 626-636, 2014
32014
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