Yuki Kato
Yuki Kato
Associate Professor, Osaka University
Bestätigte E-Mail-Adresse bei - Startseite
Zitiert von
Zitiert von
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
K Sato, Y Kato, M Hamada, T Akutsu, K Asai
Bioinformatics 27 (13), i85-i93, 2011
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming
Y Kato, K Sato, M Hamada, Y Watanabe, K Asai, T Akutsu
Bioinformatics 26 (18), i460-i466, 2010
Mutations in the adenosine deaminase ADAR1 that prevent endogenous Z-RNA binding induce Aicardi-Goutieres-syndrome-like encephalopathy
T Nakahama, Y Kato, T Shibuya, M Inoue, JI Kim, T Vongpipatana, ...
Immunity 54 (9), 1976-1988. e7, 2021
A grammatical approach to RNA–RNA interaction prediction
Y Kato, T Akutsu, H Seki
Pattern recognition 42 (4), 531-538, 2009
ADAR 1‐mediated RNA editing is required for thymic self‐tolerance and inhibition of autoimmunity
T Nakahama, Y Kato, JI Kim, T Vongpipatana, Y Suzuki, CR Walkley, ...
EMBO reports 19 (12), e46303, 2018
DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition
K Sato, Y Kato, T Akutsu, K Asai, Y Sakakibara
Bioinformatics 28 (24), 3218-3224, 2012
A comparative analysis of ADAR mutant mice reveals site-specific regulation of RNA editing
PHC Cruz, Y Kato, T Nakahama, T Shibuya, Y Kawahara
Rna 26 (4), 454-469, 2020
RNA editing at a limited number of sites is sufficient to prevent MDA5 activation in the mouse brain
JI Kim, T Nakahama, R Yamasaki, PH Costa Cruz, T Vongpipatana, ...
PLoS genetics 17 (5), e1009516, 2021
RNA pseudoknotted structure prediction using stochastic multiple context-free grammar
Y Kato, H Seki, T Kasami
IPSJ Digital Courier 2, 655-664, 2006
Prediction of RNA secondary structure including pseudoknots for long sequences
K Sato, Y Kato
Briefings in Bioinformatics 23 (1), bbab395, 2022
Prediction of RNA secondary structure with pseudoknots using integer programming
U Poolsap, Y Kato, T Akutsu
BMC bioinformatics 10, 1-11, 2009
On the generative power of multiple context-free grammars and macro grammars
H Seki, Y Kato
IEICE Transactions on Information and Systems 91 (2), 209-221, 2008
Stochastic multiple context-free grammar for RNA pseudoknot modeling
Y Kato, H Seki
Information Science Technical Report, 2006
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming
Y Kato, K Sato, K Asai, T Akutsu
Nucleic acids research 40 (W1), W29-W34, 2012
Age-dependent decline in remyelination capacity is mediated by apelin–APJ signaling
M Ito, R Muramatsu, Y Kato, B Sharma, A Uyeda, S Tanabe, H Fujimura, ...
Nature Aging 1 (3), 284-294, 2021
Branch-and-bound algorithms for enumerating treelike chemical graphs with given path frequency using detachment-cut
Y Ishida, Y Kato, L Zhao, H Nagamochi, T Akutsu
Journal of chemical information and modeling 50 (5), 934-946, 2010
Rtools: a web server for various secondary structural analyses on single RNA sequences
M Hamada, Y Ono, H Kiryu, K Sato, Y Kato, T Fukunaga, R Mori, K Asai
Nucleic acids research 44 (W1), W302-W307, 2016
On the generative power of grammars for RNA secondary structure
Y Kato, H Seki, T Kasami
IEICE TRANSACTIONS on Information and Systems 88 (1), 53-64, 2005
ADAR1 regulates early T cell development via MDA5-dependent and-independent pathways
T Vongpipatana, T Nakahama, T Shibuya, Y Kato, Y Kawahara
The Journal of Immunology 204 (8), 2156-2168, 2020
Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences
M Yano, Y Kato
BMC genomics 15, 1-11, 2014
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