Casey S. Greene
Casey S. Greene
Systems Pharmacology & Translational Therapeutics, University of Pennsylvania
Verified email at upenn.edu - Homepage
Title
Cited by
Cited by
Year
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
6922018
Oncogenic signaling pathways in the cancer genome atlas
F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ...
Cell 173 (2), 321-337. e10, 2018
6562018
Understanding multicellular function and disease with human tissue-specific networks
CS Greene, A Krishnan, AK Wong, E Ricciotti, RA Zelaya, ...
Nature Genetics, 2015
4762015
Failure to replicate a genetic association may provide important clues about genetic architecture
CS Greene, NM Penrod, SM Williams, JH Moore
PloS one 4 (6), e5639, 2009
2562009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, T Ronnen Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
2522016
Genomic and molecular landscape of DNA damage repair deficiency across The Cancer Genome Atlas
TA Knijnenburg, L Wang, MT Zimmermann, N Chambwe, GF Gao, ...
Cell reports 23 (1), 239-254. e6, 2018
2352018
International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways
HJ Cordell, Y Han, GF Mells, Y Li, GM Hirschfield, CS Greene, G Xie, ...
Nature communications 6 (1), 1-11, 2015
1772015
Big Data Bioinformatics
CS Greene, J Tan, M Ung, JH Moore, C Cheng
Journal of Cellular Physiology, 2014
1482014
Defining cell-type specificity at the transcriptional level in human disease
W Ju, CS Greene, F Eichinger, V Nair, JB Hodgin, M Bitzer, Y Lee, Q Zhu, ...
Genome research 23 (11), 1862-1873, 2013
1292013
Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions
CS Greene, NM Penrod, J Kiralis, JH Moore
BioData mining 2 (1), 5, 2009
1272009
Sci-Hub provides access to nearly all scholarly literature
DS Himmelstein, AR Romero, JG Levernier, TA Munro, SR McLaughlin, ...
ELife 7, e32822, 2018
1262018
Recent advances and emerging applications in text and data mining for biomedical discovery
GH Gonzalez, T Tahsin, BC Goodale, AC Greene, CS Greene
Briefings in bioinformatics 17 (1), 33-42, 2016
1262016
Privacy-preserving generative deep neural networks support clinical data sharing
BK Beaulieu-Jones, ZS Wu, C Williams, R Lee, SP Bhavnani, JB Byrd, ...
Circulation: Cardiovascular Quality and Outcomes 12 (7), e005122, 2019
1232019
Semi-supervised learning of the electronic health record for phenotype stratification
BK Beaulieu-Jones, CS Greene
Journal of biomedical informatics 64, 168-178, 2016
1072016
IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks
AK Wong, CY Park, CS Greene, LA Bongo, Y Guan, OG Troyanskaya
Nucleic acids research 40 (W1), W484-W490, 2012
1072012
UNSUPERVISED FEATURE CONSTRUCTION AND KNOWLEDGE EXTRACTION FROM GENOME-WIDE ASSAYS OF BREAST CANCER WITH DENOISING AUTOENCODERS
JIE TAN, M UNG, C CHENG, CS GREENE
Pacific Symposium on Biocomputing, 2015
1052015
Reproducibility of computational workflows is automated using continuous analysis
BK Beaulieu-Jones, CS Greene
Nature biotechnology 35 (4), 342-346, 2017
952017
Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders
GP Way, CS Greene
Pacific Symposium on Biocomputing, 174474, 2017
95*2017
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ...
Nature Methods, 2015
892015
Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS
CS Greene, NA Sinnott-Armstrong, DS Himmelstein, PJ Park, JH Moore, ...
Bioinformatics 26 (5), 694-695, 2010
852010
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Articles 1–20