|Comparative analysis of proteome and transcriptome variation in mouse|
A Ghazalpour, B Bennett, VA Petyuk, L Orozco, R Hagopian, IN Mungrue, ...
PLoS Genet 7 (6), e1001393, 2011
|Integrated proteogenomic characterization of human high-grade serous ovarian cancer|
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
|DAnTE: a statistical tool for quantitative analysis of-omics data|
AD Polpitiya, WJ Qian, N Jaitly, VA Petyuk, JN Adkins, DG Camp, ...
Bioinformatics 24 (13), 1556-1558, 2008
|Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels|
P Mertins, F Yang, T Liu, DR Mani, VA Petyuk, MA Gillette, KR Clauser, ...
Molecular & cellular proteomics 13 (7), 1690-1704, 2014
|Liquid chromatography-mass spectrometry-based quantitative proteomics|
F Xie, T Liu, WJ Qian, VA Petyuk, RD Smith
Journal of Biological Chemistry 286 (29), 25443-25449, 2011
|Robust Algorithm for Alignment of Liquid Chromatography− Mass Spectrometry Analyses in an Accurate Mass and Time Tag Data Analysis Pipeline|
N Jaitly, ME Monroe, VA Petyuk, TRW Clauss, JN Adkins, RD Smith
Analytical chemistry 78 (21), 7397-7409, 2006
|Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment|
H Wang, WJ Qian, MH Chin, VA Petyuk, RC Barry, T Liu, MA Gritsenko, ...
Journal of proteome research 5 (2), 361-369, 2006
|Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells|
Y Zhu, PD Piehowski, R Zhao, J Chen, Y Shen, RJ Moore, AK Shukla, ...
Nature communications 9 (1), 1-10, 2018
|Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities|
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
|Sources of technical variability in quantitative LC–MS proteomics: human brain tissue sample analysis|
PD Piehowski, VA Petyuk, DJ Orton, F Xie, RJ Moore, ...
Journal of proteome research 12 (5), 2128-2137, 2013
|Label-free quantitative LC–MS proteomics of Alzheimer’s disease and normally aged human brains|
VP Andreev, VA Petyuk, HM Brewer, YV Karpievitch, F Xie, J Clarke, ...
Journal of proteome research 11 (6), 3053-3067, 2012
|Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry|
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
|Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson’s disease|
MH Chin, WJ Qian, H Wang, VA Petyuk, JS Bloom, DM Sforza, G Lacan, ...
Journal of proteome research 7 (2), 666-677, 2008
|Mass spectrometry for translational proteomics: progress and clinical implications|
ES Baker, T Liu, VA Petyuk, KE Burnum-Johnson, YM Ibrahim, ...
Genome medicine 4 (8), 63, 2012
|5′-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure|
E Kostenko, M Dobrikov, D Pyshnyi, V Petyuk, N Komarova, V Vlassov, ...
Nucleic acids research 29 (17), 3611-3620, 2001
|Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects|
Q Zhang, ME Monroe, AA Schepmoes, TRW Clauss, MA Gritsenko, ...
Journal of proteome research 10 (7), 3076-3088, 2011
|Prediction of cognition in Parkinson's disease with a clinical–genetic score: a longitudinal analysis of nine cohorts|
G Liu, JJ Locascio, JC Corvol, B Boot, Z Liao, K Page, D Franco, K Burke, ...
The Lancet Neurology 16 (8), 620-629, 2017
|Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway|
T Shi, M Niepel, JE McDermott, Y Gao, CD Nicora, WB Chrisler, ...
Science Signaling 9 (436), rs6-rs6, 2016
|Large-scale proteomic analysis of Alzheimer’s disease brain and cerebrospinal fluid reveals early changes in energy metabolism associated with microglia and astrocyte activation|
ECB Johnson, EB Dammer, DM Duong, L Ping, M Zhou, L Yin, ...
Nature medicine 26 (5), 769-780, 2020
|Region-specific protein abundance changes in the brain of MPTP-induced Parkinson’s disease mouse model|
X Zhang, JY Zhou, MH Chin, AA Schepmoes, VA Petyuk, KK Weitz, ...
Journal of proteome research 9 (3), 1496-1509, 2010