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Frederik Otzen Bagger
Frederik Otzen Bagger
University of Cambridge and EMBL-EBI
Verified email at ebi.ac.uk
Title
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Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
23192014
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
5272016
Classification of low quality cells from single-cell RNA-seq data
T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ...
Genome biology 17 (1), 1-15, 2016
5102016
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
FO Bagger, D Sasivarevic, SH Sohi, LG Laursen, S Pundhir, CK Sřnderby, ...
Nucleic acids research 44 (D1), D917-D924, 2016
2582016
Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis
KD Rasmussen, G Jia, JV Johansen, MT Pedersen, N Rapin, FO Bagger, ...
Genes & development 29 (9), 910-922, 2015
2442015
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria
T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ...
Science immunology 2 (9), eaal2192, 2017
2312017
Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients
N Rapin, FO Bagger, J Jendholm, H Mora-Jensen, A Krogh, A Kohlmann, ...
Blood, The Journal of the American Society of Hematology 123 (6), 894-904, 2014
1492014
BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles
FO Bagger, S Kinalis, N Rapin
Nucleic acids research 47 (D1), D881-D885, 2019
1362019
C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors
MS Hasemann, FKB Lauridsen, J Waage, JS Jakobsen, AK Frank, ...
PLoS genetics 10 (1), e1004079, 2014
1012014
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
982017
shRNA screening identifies JMJD1C as being required for leukemia maintenance
P Sroczynska, VA Cruickshank, JP Bukowski, S Miyagi, FO Bagger, ...
Blood, The Journal of the American Society of Hematology 123 (12), 1870-1882, 2014
892014
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ...
Nucleic acids research 41 (D1), D1034-D1039, 2013
792013
Telomerase inhibition effectively targets mouse and human AML stem cells and delays relapse following chemotherapy
C Bruedigam, FO Bagger, FH Heidel, CP Kuhn, S Guignes, A Song, ...
Cell stem cell 15 (6), 775-790, 2014
782014
ERG promotes the maintenance of hematopoietic stem cells by restricting their differentiation
KJ Knudsen, M Rehn, MS Hasemann, N Rapin, FO Bagger, E Ohlsson, ...
Genes & development 29 (18), 1915-1929, 2015
662015
A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1p53R172H has Gain-of-Function Effects in AML
E Loizou, A Banito, G Livshits, YJ Ho, RP Koche, FJ Sánchez-Rivera, ...
Cancer discovery 9 (7), 962-979, 2019
442019
SinaPlot: an enhanced chart for simple and truthful representation of single observations over multiple classes
N Sidiropoulos, SH Sohi, TL Pedersen, BT Porse, O Winther, N Rapin, ...
Journal of Computational and Graphical Statistics 27 (3), 673-676, 2018
422018
Modification of T cell responses by stem cell mobilization requires direct signaling of the T cell by G-CSF and IL-10
K MacDonald, L Le Texier, P Zhang, H Morris, RD Kuns, KE Lineburg, ...
The Journal of Immunology 192 (7), 3180-3189, 2014
422014
COVID-19 vaccine candidates: prediction and validation of 174 SARS-CoV-2 epitopes
M Prachar, S Justesen, DB Steen-Jensen, S Thorgrimsen, E Jurgons, ...
BioRxiv, 2020.03. 20.000794, 2020
402020
The splicing factor RBM25 controls MYC activity in acute myeloid leukemia
Y Ge, MB Schuster, S Pundhir, N Rapin, FO Bagger, N Sidiropoulos, ...
Nature communications 10 (1), 172, 2019
402019
Autophagy is required for stem cell mobilization by G-CSF
L Leveque-El Mouttie, T Vu, KE Lineburg, RD Kuns, FO Bagger, BE Teal, ...
Blood, The Journal of the American Society of Hematology 125 (19), 2933-2936, 2015
392015
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