Tomas Flouri
Tomas Flouri
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Zitiert von
Zitiert von
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
J Zhang, K Kobert, T Flouri, A Stamatakis
Bioinformatics 30 (5), 614-620, 2014
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
Bioinformatics 35 (21), 4453-4455, 2019
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri
Bioinformatics 33 (11), 1630-1638, 2017
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri
Molecular biology and evolution 37 (1), 291-294, 2020
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
Species tree inference with BPP using genomic sequences and the multispecies coalescent
T Flouri, X Jiao, B Rannala, Z Yang
Molecular biology and evolution 35 (10), 2585-2593, 2018
The phylogenetic likelihood library
T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ...
Systematic biology 64 (2), 356-362, 2015
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution"
KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ...
Science 349 (6247), 487, 2015
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh
BMC evolutionary biology 18 (1), 1-11, 2018
Longest common substrings with k mismatches
T Flouri, E Giaquinta, K Kobert, E Ukkonen
Information Processing Letters 115 (6-8), 643-647, 2015
Enhanced string covering
T Flouri, CS Iliopoulos, T Kociumaka, SP Pissis, SJ Puglisi, WF Smyth, ...
Theoretical Computer Science 506, 102-114, 2013
Subtree matching by pushdown automata
T Flouri, J Janoušek, B Melichar
Computer Science and Information Systems 7 (2), 331-357, 2010
The divisible load balance problem and its application to phylogenetic inference
K Kobert, T Flouri, A Aberer, A Stamatakis
International workshop on algorithms in bioinformatics, 204-216, 2014
Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
K Kobert, A Stamatakis, T Flouri
Systematic biology 66 (2), 205-217, 2017
Subtree matching by deterministic pushdown automata
T Flouri, B Melichar, J Janoušek
2009 International Multiconference on Computer Science and Information …, 2009
The state of software for evolutionary biology
D Darriba, T Flouri, A Stamatakis
Molecular biology and evolution 35 (5), 1037-1046, 2018
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