Tomas Flouri

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Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Kassian KobertUni BielefeldVerified email at uni-bielefeld.de
Torbjørn RognesDept. of Informatics, University of Oslo & Dept. of Microbiology, Oslo University HospitalVerified email at ifi.uio.no
Frédéric MahéCIRAD, UMR PHIM, F-34398, Montpellier, FranceVerified email at cirad.fr
Christopher QuinceUniversity of WarwickVerified email at warwick.ac.uk
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Jiajie ZhangGSKVerified email at gsk.com
Paschalia KapliPostdoc, Genetics, Evolution and Environment, University College LondonVerified email at ucl.ac.uk
Jan JanousekCzech Technical UniversityVerified email at fit.cvut.cz
Fernando Izquierdo-CarrascoAmazon Web ServicesVerified email at amazon.com
Andre J. AbererVerified email at aberer.io
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Bui Quang Minh (Minh Bùi)Senior Lecturer, Australian National UniversityVerified email at anu.edu.au
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verified email at h-its.org
Simon J. PuglisiProfessor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Tomasz KociumakaMax Planck Institute for Informatics, Saarland Informatics CampusVerified email at mpi-inf.mpg.de
W F SmythProfessor Emeritus, Computer Science, McMaster UniversityVerified email at mcmaster.ca

Tomas Flouri

Other namesThomas Flouris

University College London

Verified email at ucl.ac.uk

Algorithms High-performance computing Bioinformatics Phylogenetics Evolutionary Biology


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VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016	6114	2016
PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014	3578	2014
Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	2247	2014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019	1877	2019
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020	872	2020
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé	745	2016
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017	641	2017
EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019	349	2019
Species tree inference with BPP using genomic sequences and the multispecies coalescent T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 35 (10), 2585-2593, 2018	250	2018
VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé	203	2016
The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015	126	2015
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18 (1), 1-11, 2018	123	2018
A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 37 (4), 1211-1223, 2020	90	2020
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution" KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ... Science 349 (6247), 487, 2015	81	2015
An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola) A Vasilikopoulos, B Misof, K Meusemann, D Lieberz, T Flouri, RG Beutel, ... BMC Evolutionary Biology 20 (1), 1-24, 2020	66	2020
VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016 T Rognes, T Flouri, B Nichols, C Quince, F Mahé October 18, e2584, 2016	63	2016
Species delimitation B Rannala, Z Yang Self published, 2020	46	2020
Longest common substrings with k mismatches T Flouri, E Giaquinta, K Kobert, E Ukkonen Information Processing Letters 115 (6-8), 643-647, 2015	43	2015
Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments AGP Ford, TR Bullen, L Pang, MJ Genner, R Bills, T Flouri, BP Ngatunga, ... Molecular phylogenetics and evolution 136, 215-226, 2019	39	2019
The state of software for evolutionary biology D Darriba, T Flouri, A Stamatakis Molecular biology and evolution 35 (5), 1037-1046, 2018	38	2018

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