Tomas Flouri

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Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
Kassian KobertUniversite de LyonVerified email at univ-lyon1.fr
Torbjørn RognesUniversity of Oslo & Oslo University Hospital, NorwayVerified email at ifi.uio.no
Diego DarribaUniversity of A Coruña, CITIC, Computer Architecture GroupVerified email at udc.es
Jiajie ZhangGSKVerified email at gsk.com
Frédéric MahéCIRAD, UMR PHIM, F-34398, Montpellier, FranceVerified email at cirad.fr
Christopher QuinceUniversity of WarwickVerified email at warwick.ac.uk
Jan JanousekCzech Technical UniversityVerified email at fit.cvut.cz
Paschalia KapliPostdoc, Genetics, Evolution and Environment, University College LondonVerified email at ucl.ac.uk
Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Andre J. AbererVerified email at aberer.io
Fernando Izquierdo-CarrascoAmazon Web ServicesVerified email at amazon.com
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Bui Quang Minh (Minh Bùi)Senior Lecturer, Australian National UniversityVerified email at anu.edu.au
Simon J. PuglisiAssociate Professor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verified email at h-its.org
Tomasz KociumakaUniversity of California, BerkeleyVerified email at berkeley.edu
W F SmythProfessor Emeritus, Computer Science, McMaster UniversityVerified email at mcmaster.ca

Tomas Flouri

University College London

Verified email at ucl.ac.uk


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016	3364	2016
PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014	2684	2014
Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014	1725	2014
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019	661	2019
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé	368	2016
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017	356	2017
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular Biology and Evolution 37 (1), 291-294, 2020	285	2020
EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019	156	2019
Species tree inference with BPP using genomic sequences and the multispecies coalescent T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 35 (10), 2585-2593, 2018	122	2018
VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé	119	2016
The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015	77	2015
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution" KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ... Science 349 (6247), 487, 2015	65	2015
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18 (1), 1-11, 2018	61	2018
Longest common substrings with k mismatches T Flouri, E Giaquinta, K Kobert, E Ukkonen Information Processing Letters 115 (6-8), 643-647, 2015	36	2015
Enhanced string covering T Flouri, CS Iliopoulos, T Kociumaka, SP Pissis, SJ Puglisi, WF Smyth, ... Theoretical Computer Science 506, 102-114, 2013	28	2013
A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 37 (4), 1211-1223, 2020	27	2020
Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations K Kobert, A Stamatakis, T Flouri Systematic biology 66 (2), 205-217, 2017	23	2017
The state of software for evolutionary biology D Darriba, T Flouri, A Stamatakis Molecular biology and evolution 35 (5), 1037-1046, 2018	22	2018
The divisible load balance problem and its application to phylogenetic inference K Kobert, T Flouri, A Aberer, A Stamatakis International workshop on algorithms in bioinformatics, 204-216, 2014	21	2014
Subtree matching by pushdown automata T Flouri, J Janoušek, B Melichar Computer Science and Information Systems 7 (2), 331-357, 2010	18	2010

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