Tomas Flouri
Tomas Flouri
Verified email at ucl.ac.uk
TitleCited byYear
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
J Zhang, K Kobert, T Flouri, A Stamatakis
Bioinformatics 30 (5), 614-620, 2013
16402013
Phylogenomics resolves the timing and pattern of insect evolution
B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ...
Science 346 (6210), 763-767, 2014
12432014
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
12402016
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri
Bioinformatics 33 (11), 1630-1638, 2017
1482017
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
1232016
RAxML-NG: A fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference
A Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
bioRxiv, 447110, 2019
732019
The phylogenetic likelihood library
T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ...
Systematic biology 64 (2), 356-362, 2014
562014
Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution"
KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ...
Science 349 (6247), 487, 2015
502015
Longest common substrings with k mismatches
T Flouri, E Giaquinta, K Kobert, E Ukkonen
Information Processing Letters 115 (6-8), 643-647, 2015
242015
Species tree inference with BPP using genomic sequences and the multispecies coalescent
T Flouri, X Jiao, B Rannala, Z Yang
Molecular biology and evolution 35 (10), 2585-2593, 2018
222018
Enhanced string covering
T Flouri, CS Iliopoulos, T Kociumaka, SP Pissis, SJ Puglisi, WF Smyth, ...
Theoretical Computer Science 506, 102-114, 2013
222013
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2018
212018
Subtree matching by pushdown automata.
T Flouri, J Janousek, B Melichar
Comput. Sci. Inf. Syst. 7 (2), 331-357, 2010
192010
The divisible load balance problem and its application to phylogenetic inference
K Kobert, T Flouri, A Aberer, A Stamatakis
International Workshop on Algorithms in Bioinformatics, 204-216, 2014
182014
Subtree matching by deterministic pushdown automata
T Flouri, B Melichar, J Janoušek
2009 International Multiconference on Computer Science and Information …, 2009
182009
The state of software for evolutionary biology
D Darriba, T Flouri, A Stamatakis
Molecular biology and evolution 35 (5), 1037-1046, 2018
152018
Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations
K Kobert, A Stamatakis, T Flouri
Systematic biology 66 (2), 205-217, 2017
142017
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh
BMC evolutionary biology 18 (1), 11, 2018
132018
Boosting the performance of bayesian divergence time estimation with the phylogenetic likelihood library
D Darriba, A Aberer, T Flouri, TA Heath, F Izquierdo-Carrasco, ...
2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013
132013
Bioinformatics. 2014
J Zhang, K Kobert, T Flouri, A Stamatakis
PEAR: a fast and accurate Illumina Paired-End reAd mergeR, 614-620, 0
13
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Articles 1–20