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Tim van Opijnen
Tim van Opijnen
Boston Children's Hospital
Verified email at childrens.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
T Van Opijnen, KL Bodi, A Camilli
Nature methods 6 (10), 767-772, 2009
9612009
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
T Van Opijnen, A Camilli
Nature Reviews Microbiology 11 (7), 435-442, 2013
5482013
A decade of advances in transposon-insertion sequencing
AK Cain, L Barquist, AL Goodman, IT Paulsen, J Parkhill, T van Opijnen
Nature Reviews Genetics 21 (9), 526-540, 2020
2692020
A fine scale phenotype–genotype virulence map of a bacterial pathogen
T van Opijnen, A Camilli
Genome research 22 (12), 2541-2551, 2012
2482012
Control of Virulence by Small RNAs in Streptococcus pneumoniae
B Mann, T van Opijnen, J Wang, C Obert, YD Wang, R Carter, ...
PLoS pathogens 8 (7), e1002788, 2012
1752012
High temperatures eliminate Wolbachia, a cytoplasmic incompatibility inducing endosymbiont, from the two-spotted spider mite
T Van Opijnen, JAJ Breeuwer
Experimental & applied acarology 23, 871-881, 1999
1511999
Genome‐Wide Fitness and Genetic Interactions Determined by Tn‐seq, a High‐Throughput Massively Parallel Sequencing Method for Microorganisms: Emerging Technologies
T van Opijnen, DW Lazinski, A Camilli
Current protocols in microbiology 36 (1), 1E. 3.1-1E. 3.24, 2015
1192015
Human immunodeficiency virus type 1 subtypes have a distinct long terminal repeat that determines the replication rate in a host-cell-specific manner
T van Opijnen, RE Jeeninga, MC Boerlijst, GP Pollakis, V Zetterberg, ...
Journal of virology 78 (7), 3675-3683, 2004
1182004
AFLP fingerprinting for assessing intraspecific variation and genome mapping in mites
AR Weeks, T Van Opijnen, JAJ Breeuwer
Experimental & applied acarology 24, 775-793, 2000
802000
Elevated CO2 improves both lipid accumulation and growth rate in the glucose-6-phosphate dehydrogenase engineered Phaeodactylum tricornutum
S Wu, W Gu, A Huang, Y Li, M Kumar, PE Lim, L Huan, S Gao, G Wang
Microbial cell factories 18, 1-16, 2019
73*2019
Genome‐wide fitness and genetic interactions determined by Tn‐seq, a high‐throughput massively parallel sequencing method for microorganisms
T Van Opijnen, DW Lazinski, A Camilli
Current protocols in molecular biology 106 (1), 7.16. 1-7.16. 24, 2014
712014
Dielectrophoresis assisted rapid, selective and single cell detection of antibiotic resistant bacteria with G-FETs
N Kumar, W Wang, JC Ortiz-Marquez, M Catalano, M Gray, N Biglari, ...
Biosensors and Bioelectronics 156, 112123, 2020
702020
Genomic analyses of pneumococci from children with sickle cell disease expose host-specific bacterial adaptations and deficits in current interventions
R Carter, J Wolf, T Van Opijnen, M Muller, C Obert, C Burnham, B Mann, ...
Cell host & microbe 15 (5), 587-599, 2014
702014
The human immunodeficiency virus type 1 promoter contains a CATA box instead of a TATA box for optimal transcription and replication
T Van Opijnen, J Kamoschinski, RE Jeeninga, B Berkhout
Journal of virology 78 (13), 6883-6890, 2004
662004
Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope
E Geisinger, NJ Mortman, Y Dai, M Cokol, S Syal, A Farinha, DG Fisher, ...
Nature communications 11 (1), 4522, 2020
642020
Antibiotics disrupt coordination between transcriptional and phenotypic stress responses in pathogenic bacteria
PA Jensen, Z Zhu, T van Opijnen
Cell reports 20 (7), 1705-1716, 2017
622017
Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes
D Thibault, PA Jensen, S Wood, C Qabar, S Clark, MG Shainheit, ...
Nature Communications 10 (1), 5729, 2019
612019
Phage display of dynamic covalent binding motifs enables facile development of targeted antibiotics
KA McCarthy, MA Kelly, K Li, S Cambray, AS Hosseini, T van Opijnen, ...
Journal of the American Chemical Society 140 (19), 6137-6145, 2018
592018
Strain dependent genetic networks for antibiotic-sensitivity in a bacterial pathogen with a large pan-genome
T van Opijnen, S Dedrick, J Bento
PLoS pathogens 12 (9), e1005869, 2016
582016
Bacterial factors required for transmission of Streptococcus pneumoniae in mammalian hosts
HM Rowe, E Karlsson, H Echlin, TC Chang, L Wang, T van Opijnen, ...
Cell host & microbe 25 (6), 884-891. e6, 2019
562019
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