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Ajeet K. Sharma
Ajeet K. Sharma
Department of Physics, IIT Jammu
Verified email at iitjammu.ac.in - Homepage
Title
Cited by
Cited by
Year
Kinetic and structural comparison of a protein’s cotranslational folding and refolding pathways
AJ Samelson, E Bolin, SM Costello, AK Sharma, EP O’Brien, S Marqusee
Science Advances 4 (5), eaas9098, 2018
592018
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
AK Sharma, P Sormanni, N Ahmed, P Ciryam, UA Friedrich, G Kramer, ...
PLoS computational biology 15 (5), e1007070, 2019
582019
Accurate prediction of cellular co-translational folding indicates proteins can switch from post- to co-translational folding
DA Nissley, AK Sharma, N Ahmed, UA Friedrich, G Kramer, B Bukau, ...
Nature communications 7, 10341, 2016
542016
Non-equilibrium coupling of protein structure and function to translation–elongation kinetics
AK Sharma, EP O’Brien
Current Opinion in Structural Biology 49, 94-103, 2018
532018
Stochastic theory of protein synthesis and polysome: Ribosome profile on a single mRNA transcript
AK Sharma, D Chowdhury
Journal of Theoretical Biology 289, 36-46, 2011
442011
Distribution of dwell times of a ribosome: effects of infidelity, kinetic proofreading and ribosome crowding
AK Sharma, D Chowdhury
Physical biology 8 (2), 026005, 2011
352011
The physical origins of codon positions that strongly influence cotranslational folding: A framework for controlling nascent-protein folding
AK Sharma, B Bukau, EP O'Brien
Journal of the American Chemical Society, 2015
322015
Determinants of translation speed are randomly distributed across transcripts resulting in a universal scaling of protein synthesis times
AK Sharma, N Ahmed, EP O’Brien
Physical Review E 97 (2), 022409, 2018
212018
A CRISPR/Cas9 system adapted for gene editing in marine algae. Sci Rep 6: 24951
M Nymark, AK Sharma, T Sparstad, AM Bones, P Winge
162016
Quantitative connection between ensemble thermodynamics and single-molecule kinetics: a case study using cryogenic electron microscopy and single-molecule fluorescence …
CD Kinz-Thompson, AK Sharma, J Frank, RL Gonzalez Jr, D Chowdhury
The Journal of Physical Chemistry B 119 (34), 10888-10901, 2015
152015
Quality control by a mobile molecular workshop: Quality versus quantity
AK Sharma, D Chowdhury
Physical Review E 82 (3), 031912, 2010
152010
Increasing protein production rates can decrease the rate at which functional protein is produced and their steady-state levels
AK Sharma, EP O’Brien
The Journal of Physical Chemistry B 121 (28), 6775-6784, 2017
142017
Error correction during DNA replication
AK Sharma, D Chowdhury
Physical Review E 86 (1), 011913, 2012
132012
Quantitative modeling of protein synthesis using ribosome profiling data
V Yadav, I Ullah Irshad, H Kumar, AK Sharma
Frontiers in Molecular Biosciences 8, 688700, 2021
112021
Template-directed biopolymerization: Tape-copying turing machines
AK Sharma, D Chowdhury
Biophysical Reviews and Letters 7 (03n04), 135-175, 2012
112012
Distribution of lifetimes of kinetochore–microtubule attachments: interplay of energy landscape, molecular motors and microtubule (de-) polymerization
AK Sharma, B Shtylla, D Chowdhury
Physical Biology 11 (3), 036004, 2014
82014
Combinations of slow-translating codon clusters can increase mRNA half-life in Saccharomyces cerevisiae
AK Sharma, J Venezian, A Shiber, G Kramer, B Bukau, EP O’Brien
Proceedings of the National Academy of Sciences 118 (51), e2026362118, 2021
52021
Hierarchical Markov state model building to describe molecular processes
DK Wolfe, JR Persichetti, AK Sharma, PS Hudson, HL Woodcock, ...
Journal of chemical theory and computation 16 (3), 1816-1826, 2020
52020
Fundamental insights into the correlation between chromosome configuration and transcription
S Senapati, IU Irshad, AK Sharma, H Kumar
Physical Biology 20 (5), 051002, 2023
22023
Optimization of ribosome utilization in Saccharomyces cerevisiae
AK Sharma
PNAS nexus 2 (3), pgad074, 2023
22023
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