William "Bill" Andreopoulos
William "Bill" Andreopoulos
Assistant Professor, Computer Science, San Jose State University
Bestätigte E-Mail-Adresse bei
Zitiert von
Zitiert von
Data classification
CC Aggarwal, CC Aggarwal
Data Mining: The Textbook, 285-344, 2015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature Ecology & Evolution 3 (4), 668-678, 2019
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS computational biology 4 (7), e1000108, 2008
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96 (1), 141-153, 2020
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature Microbiology 3 (12), 1417-1428, 2018
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity
FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ...
Molecular biology and evolution 38 (4), 1428-1446, 2021
Genetic determinants of endophytism in the Arabidopsis root mycobiome
F Mesny, S Miyauchi, T Thiergart, B Pickel, L Atanasova, M Karlsson, ...
Nature communications 12 (1), 7227, 2021
Convolutional neural networks and extreme learning machines for malware classification
M Jain, W Andreopoulos, M Stamp
Journal of Computer Virology and Hacking Techniques 16, 229-244, 2020
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10, 1-15, 2009
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ...
Applied microbiology and biotechnology 103, 8145-8155, 2019
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
LA Lofgren, NH Nguyen, R Vilgalys, J Ruytinx, HL Liao, S Branco, A Kuo, ...
New Phytologist 230 (2), 774-792, 2021
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins
AM Geller, I Pollin, D Zlotkin, A Danov, N Nachmias, WB Andreopoulos, ...
Nature communications 12 (1), 3743, 2021
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Advances in Knowledge Discovery and Data Mining: 11th Pacific-Asia …, 2007
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