Anne Siegel

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Valerie BertheIRIF, CNRSVerified email at irif.fr
Clémence FriouxInria, Univ. Bordeaux, INRAE, 33400 Talence, FranceVerified email at inria.fr
Carito GuziołowskiAssociate professor of Computer Science, IRCCyN, École Centrale de NantesVerified email at irccyn.ec-nantes.fr
Sven ThielePotassco Solutions GmbHVerified email at potassco.com
Simon DittamiStation Biologique de RoscoffVerified email at sb-roscoff.fr
Damien EveillardNantes Université, Centrale Nantes, CNRS, LS2N, Université de NantesVerified email at univ-nantes.fr
Jérémie BourdonFull Professor, Université de NantesVerified email at univ-nantes.fr
Ovidiu RadulescuProfessor at University of MontpellierVerified email at umontpellier.fr
Olivier DameronUniversité de Rennes1Verified email at univ-rennes1.fr
Torsten SchaubUniversity of PotsdamVerified email at cs.uni-potsdam.de
Julio Saez RodriguezHeidelberg UniversityVerified email at uni-heidelberg.de
Alejandro MaassCenter for Mathematical Modeling, University of ChileVerified email at dim.uchile.cl
Arnaud BelcourInriaVerified email at inria.fr
catherine boyenDirectrice de recherche CNRS RoscoffVerified email at sb-roscoff.fr
Gabriel V. MarkovUMR 8227 Integrative Biology of Marine Models, Station Biologique de RoscoffVerified email at sb-roscoff.fr
Thierry TononCentre for Novel Agricultural Products, Department of Biology, University of YorkVerified email at york.ac.uk
sylvain prigentUMR 1332, Biologie des Fruits et Pathologies, INRAEVerified email at inrae.fr
Jörg ThuswaldnerUniversity of LeobenVerified email at unileoben.ac.at
Loïc PaulevéCNRS/LaBRI, Bordeaux, FranceVerified email at ens-cachan.org
Martin GebserUniversity of Klagenfurt / Graz University of TechnologyVerified email at aau.at

Anne Siegel

Research Director, CNRS, IRISA (Rennes, France)

Verified email at irisa.fr

Dynamical systems systems biology bioinformatics


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Substitutions in dynamics, arithmetics and combinatorics P Arnoux, V Berthé, S Ferenci, S Ito, C Mauduit, M Mori, J Peyriere, ... Lecture Notes in Mathematics 1794, 2002	1056*	2002
Tilings associated with beta-numeration and substitutions V Berthé, A Siegel Integers 5 (3), A2, 2005	138	2005
Geometric representation of substitutions of Pisot type V Canterini, A Siegel Transactions of the American Mathematical Society 353 (12), 5121-5144, 2001	136	2001
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, ... PLoS computational biology 14 (5), e1006146, 2018	118	2018
Repair and prediction (under inconsistency) in large biological networks with answer set programming M Gebser, C Guziolowski, M Ivanchev, T Schaub, A Siegel, S Thiele, ... Twelfth International Conference on the Principles of Knowledge …, 2010	104	2010
Meneco, a topology-based gap-filling tool applicable to degraded genome-wide metabolic networks S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ... PLoS computational biology 13 (1), e1005276, 2017	101	2017
Exhaustively characterizing feasible logic models of a signaling network using answer set programming C Guziolowski, S Videla, F Eduati, S Thiele, T Cokelaer, A Siegel, ... Bioinformatics 29 (18), 2320-2326, 2013	94	2013
A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs F Gondret, A Vincent, M Houée-Bigot, A Siegel, S Lagarrigue, D Causeur, ... BMC genomics 18, 1-17, 2017	83	2017
Automate des préfixes-suffixes associés à une substitution primitive V Canterini, A Siegel J. Th eor. Nombres Bordeaux 13 (2), 353-369, 2001	83	2001
Topological properties of Rauzy fractals A Siegel, JM Thuswaldner Mémoires de la SMF 118, 2009	82	2009
MiR-202 controls female fecundity by regulating medaka oogenesis S Gay, J Bugeon, A Bouchareb, L Henry, C Delahaye, F Legeai, ... PLoS genetics 14 (9), e1007593, 2018	77	2018
On the Pisot substitution conjecture S Akiyama, M Barge, V Berthé, JY Lee, A Siegel Mathematics of aperiodic order, 33-72, 2015	77	2015
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species A Belcour, C Frioux, M Aite, A Bretaudeau, F Hildebrand, A Siegel Elife 9, e61968, 2020	71	2020
Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming M Ostrowski, L Paulevé, T Schaub, A Siegel, C Guziolowski Biosystems 149, 139-153, 2016	58	2016
Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks A Siegel, O Radulescu, M Le Borgne, P Veber, J Ouy, S Lagarrigue Biosystems 84 (2), 153-174, 2006	58	2006
Two-dimensional iterated morphisms and discrete planes P Arnoux, V Berthé, A Siegel Theoretical Computer Science 319 (1-3), 145-176, 2004	54	2004
Cyanorak v2. 1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes L Garczarek, U Guyet, H Doré, GK Farrant, M Hoebeke, L Brillet-Guéguen, ... Nucleic acids research 49 (D1), D667-D676, 2021	53	2021
Représentation des systemes dynamiques substitutifs non unimodulaires A Siegel Ergodic Theory and Dynamical Systems 23 (4), 1247-1273, 2003	52	2003
Purely periodic β-expansions in the Pisot non-unit case V Berthé, A Siegel Journal of Number Theory 127 (2), 153-172, 2007	49	2007
Pure discrete spectrum dynamical system and periodic tiling associated with a substitution A Siegel Annales de l'Institut Fourier 54 (2), 341-382, 2004	48	2004

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