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Caroline Friedel
Caroline Friedel
Professor of Bioinformatics, Institut für Informatik, LMU Munich
Verified email at bio.ifi.lmu.de - Homepage
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Cited by
Cited by
Year
β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments
HB Schiller, MR Hermann, J Polleux, T Vignaud, S Zanivan, CC Friedel, ...
Nature cell biology 15 (6), 625-636, 2013
4992013
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
L Dölken, Z Ruzsics, B Rädle, CC Friedel, R Zimmer, J Mages, ...
Rna 14 (9), 1959-1972, 2008
4722008
The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors
S Pfefferle, J Schöpf, M Kögl, CC Friedel, MA Müller, J Carbajo-Lozoya, ...
PLoS pathogens 7 (10), e1002331, 2011
4472011
Quantitative proteomics of the integrin adhesome show a myosin II‐dependent recruitment of LIM domain proteins
HB Schiller, CC Friedel, C Boulegue, R Fässler
EMBO reports 12 (3), 259-266, 2011
3802011
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
CC Friedel, L Dölken, Z Ruzsics, UH Koszinowski, R Zimmer
Nucleic acids research 37 (17), e115-e115, 2009
2662009
Widespread disruption of host transcription termination in HSV-1 infection
AJ Rutkowski, F Erhard, A L’Hernault, T Bonfert, M Schilhabel, C Crump, ...
Nature communications 6 (1), 7126, 2015
2632015
Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome
A von Brunn, C Teepe, JC Simpson, R Pepperkok, CC Friedel, R Zimmer, ...
PloS one 2 (5), e459, 2007
2622007
Systematic analysis of viral and cellular microRNA targets in cells latently infected with human γ-herpesviruses by RISC immunoprecipitation assay
L Dölken, G Malterer, F Erhard, S Kothe, CC Friedel, G Suffert, ...
Cell host & microbe 7 (4), 324-334, 2010
2552010
Evolutionarily conserved herpesviral protein interaction networks
E Fossum, CC Friedel, SV Rajagopala, B Titz, A Baiker, T Schmidt, ...
PLoS pathogens 5 (9), e1000570, 2009
2292009
Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2
X Zhou, S Wahane, MS Friedl, M Kluge, CC Friedel, K Avrampou, ...
Nature neuroscience 23 (3), 337-350, 2020
1672020
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution
L Windhager, T Bonfert, K Burger, Z Ruzsics, S Krebs, S Kaufmann, ...
Genome research 22 (10), 2031-2042, 2012
1602012
4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response
K Burger, B Mühl, M Kellner, M Rohrmoser, A Gruber-Eber, L Windhager, ...
RNA biology 10 (10), 1623-1630, 2013
1552013
Reliable gene signatures for microarray classification: assessment of stability and performance
CA Davis, F Gerick, V Hintermair, CC Friedel, K Fundel, R Küffner, ...
Bioinformatics 22 (19), 2356-2363, 2006
1282006
Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture
B Rädle, AJ Rutkowski, Z Ruzsics, CC Friedel, UH Koszinowski, L Dölken
JoVE (Journal of Visualized Experiments), e50195, 2013
1202013
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway
Y Murakawa, M Hinz, J Mothes, A Schuetz, M Uhl, E Wyler, T Yasuda, ...
Nature communications 6 (1), 7367, 2015
1152015
A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication
SJ Griffiths, M Koegl, C Boutell, HL Zenner, CM Crump, F Pica, ...
PLoS Pathogens 9 (8), e1003514, 2013
1122013
A comprehensive evaluation of alignment algorithms in the context of RNA-seq
R Lindner, CC Friedel
PLoS One 7 (12), e52403, 2012
932012
Gene signatures of quiescent glioblastoma cells reveal mesenchymal shift and interactions with niche microenvironment
R Tejero, Y Huang, I Katsyv, M Kluge, JY Lin, J Tome-Garcia, N Daviaud, ...
EBioMedicine 42, 252-269, 2019
882019
Bootstrapping the interactome: unsupervised identification of protein complexes in yeast
CC Friedel, J Krumsiek, R Zimmer
Journal of Computational Biology 16 (8), 971-987, 2009
862009
Genome-Wide Assessment of AU-Rich Elements by the AREScore Algorithm
M Spasic, CC Friedel, J Schott, J Kreth, K Leppek, S Hofmann, S Ozgur, ...
PLoS genetics 8 (1), e1002433, 2012
852012
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