| CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms C Terfve, T Cokelaer, D Henriques, A MacNamara, E Goncalves, ... BMC systems biology 6 (1), 1-14, 2012 | 183 | 2012 |
| MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics JA Egea, D Henriques, T Cokelaer, AF Villaverde, A MacNamara, ... BMC bioinformatics 15 (1), 1-9, 2014 | 121 | 2014 |
| AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology E Balsa-Canto, D Henriques, A Gábor, JR Banga Bioinformatics 32 (21), 3357-3359, 2016 | 99 | 2016 |
| State–time spectrum of signal transduction logic models A MacNamara, C Terfve, D Henriques, BP Bernabé, J Saez-Rodriguez Physical biology 9 (4), 045003, 2012 | 74 | 2012 |
| BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ... BMC systems biology 9 (1), 1-15, 2015 | 70 | 2015 |
| Data-driven reverse engineering of signaling pathways using ensembles of dynamic models D Henriques, AF Villaverde, M Rocha, J Saez-Rodriguez, JR Banga PLoS computational biology 13 (2), e1005379, 2017 | 37 | 2017 |
| SYNBADm: a tool for optimization-based automated design of synthetic gene circuits I Otero-Muras, D Henriques, JR Banga Bioinformatics 32 (21), 3360-3362, 2016 | 22 | 2016 |
| Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach D Henriques, M Rocha, J Saez-Rodriguez, JR Banga Bioinformatics 31 (18), 2999-3007, 2015 | 20 | 2015 |
| Saccharomyces cerevisiae and S. kudriavzevii synthetic wine fermentation performance dissected by predictive modeling D Henriques, J Alonso-del-Real, A Querol, E Balsa-Canto Frontiers in microbiology 9, 88, 2018 | 13 | 2018 |
| Systems pharmacology dissection of cholesterol regulation reveals determinants of large pharmacodynamic variability between cell lines P Blattmann, D Henriques, M Zimmermann, F Frommelt, U Sauer, ... Cell systems 5 (6), 604-619. e7, 2017 | 13 | 2017 |
| A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology DR Penas, D Henriques, P González, R Doallo, J Saez-Rodriguez, ... PloS one 12 (8), e0182186, 2017 | 11 | 2017 |
| Modeling signaling networks with different formalisms: A preview A MacNamara, D Henriques, J Saez-Rodriguez In Silico Systems Biology, 89-105, 2013 | 4 | 2013 |
| MEIGO: a software suite based on metaheuristics for global optimization in systems biology and bioinformatics JA Egea, D Henriques, T Cokelear, AF Villaverde, JR Banga, ... Submitted (available on arXiv. org: http://arxiv. org/abs/1311.5735), 2014 | 3 | 2014 |
| A multi-phase multi-objective dynamic genome-scale model shows different redox balancing among yeast species in fermentation D Henriques, R Minebois, SN Mendonza, LG Macías, R Pérez-Torrado, ... bioRxiv, 2021 | | 2021 |
| A multi-phase multi-objective genome-scale model shows diverse redox balance strategies in yeasts D Henriques, R Minebois, S Mendonza, LG Macias, R Pérez-Torrado, ... bioRxiv, 2021 | | 2021 |
| Monod law is insufficient to explain biomass growth in nitrogen-limited yeast fermentation D Henriques, E Balsa-Canto bioRxiv, 2021 | | 2021 |
| Bioinformatics and systems biology for the design of novel wines D Henriques, R Minebois, LG Macías, R Pérez-Torrado, E Barrio, ... | | 2020 |
| Predicting Dynamic Metabolic Flux Distributions in Wine Fermentation D Henriques, R Minebois, R Pérez-Torrado, A Querol, E Balsa-Canto | | 2019 |
| Una metaheurística paralela para grandes problemas de optimización dinámica entera mixta, con aplicaciones en la biología computacional DP Alonso, D Henriques, P González, R Doallo, JS Rodriguez, JR Banga XVIII Conferencia de la Asociación Española para la Inteligencia Artificial …, 2018 | | 2018 |
| S4 Text: Ensemble predictive skill depending on ensemble size for different case-studies D Henriques, AF Villaverde, M Rocha, J Saez-Rodriguez, JR Banga | | 2017 |
Julio Saez RodriguezHeidelberg UniversityBestätigte E-Mail-Adresse bei bioquant.uni-heidelberg.de
