Howard M Salis
Howard M Salis
Professor of Biological Engineering and Chemical Engineering, Penn State University
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Zitiert von
Zitiert von
Automated design of synthetic ribosome binding sites to control protein expression
HM Salis, EA Mirsky, CA Voigt
Nature biotechnology 27 (10), 946-950, 2009
A synthetic genetic edge detection program
JJ Tabor, HM Salis, ZB Simpson, AA Chevalier, A Levskaya, EM Marcotte, ...
Cell 137 (7), 1272-1281, 2009
Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites
A Espah Borujeni, AS Channarasappa, HM Salis
Nucleic acids research 42 (4), 2646-2659, 2014
Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
H Salis, Y Kaznessis
The Journal of chemical physics 122 (5), 054103, 2005
The ribosome binding site calculator
HM Salis
Methods in enzymology 498, 19-42, 2011
Efficient Search, Mapping, and Optimization of Multi-protein Genetic Systems in Diverse Bacteria
I Farasat, M Kushwaha, J Collens, M Easterbrook, M Guido, HM Salis
Molecular Systems Biology 10 (6), 2014
Kinetic buffering of cross talk between bacterial two-component sensors
ES Groban, EJ Clarke, HM Salis, SM Miller, CA Voigt
Journal of molecular biology 390 (3), 380-393, 2009
Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration
CY Ng, I Farasat, CD Maranas, HM Salis
Metabolic engineering 29, 86-96, 2015
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
H Salis, V Sotiropoulos, YN Kaznessis
BMC bioinformatics 7 (1), 93, 2006
Automated physics-based design of synthetic riboswitches from diverse RNA aptamers
A Espah Borujeni, DM Mishler, J Wang, W Huso, HM Salis
Nucleic acids research 44 (1), 1-13, 2016
An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks
H Salis, YN Kaznessis
The Journal of chemical physics 123 (21), 214106, 2005
A biophysical model of CRISPR/Cas9 activity for rational design of genome editing and gene regulation
I Farasat, HM Salis
PLoS computational biology 12 (1), e1004724, 2016
Reversing methanogenesis to capture methane for liquid biofuel precursors
VWC Soo, MJ McAnulty, A Tripathi, F Zhu, L Zhang, E Hatzakis, PB Smith, ...
Microbial cell factories 15 (1), 1-14, 2016
Translation initiation is controlled by RNA folding kinetics via a ribosome drafting mechanism
A Espah Borujeni, HM Salis
Journal of the American Chemical Society 138 (22), 7016-7023, 2016
A portable expression resource for engineering cross-species genetic circuits and pathways
M Kushwaha, HM Salis
Nature communications 6 (1), 1-11, 2015
Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1
K Temme, H Salis, D Tullman-Ercek, A Levskaya, SH Hong, CA Voigt
Journal of molecular biology 377 (1), 47-61, 2008
A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons
T Tian, HM Salis
Nucleic acids research 43 (14), 7137-7151, 2015
Engineering bacterial signals and sensors
H Salis, A Tamsir, C Voigt
Bacterial Sensing and Signaling 16, 194-225, 2009
Model-driven designs of an oscillating gene network
LM Tuttle, H Salis, J Tomshine, YN Kaznessis
Biophysical journal 89 (6), 3873-3883, 2005
Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences
A Espah Borujeni, D Cetnar, I Farasat, A Smith, N Lundgren, HM Salis
Nucleic acids research 45 (9), 5437-5448, 2017
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