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Mark D'Souza
Mark D'Souza
University of Chicago, Argonne National Laboratory
Bestätigte E-Mail-Adresse bei uchicago.edu
Titel
Zitiert von
Zitiert von
Jahr
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9, 1-8, 2008
39862008
The use of gene clusters to infer functional coupling
R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev
Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999
16111999
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ...
Nature 423 (6935), 87-91, 2003
9862003
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
SY Gerdes, MD Scholle, JW Campbell, G Balazsi, E Ravasz, ...
Journal of bacteriology 185 (19), 5673-5684, 2003
9292003
The genome sequence of the facultative intracellular pathogen Brucella melitensis
VG DelVecchio, V Kapatral, RJ Redkar, G Patra, C Mujer, T Los, ...
Proceedings of the National Academy of Sciences 99 (1), 443-448, 2002
7302002
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ...
Nucleic acids research 28 (1), 123-125, 2000
5022000
Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586
V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ...
Journal of bacteriology 184 (7), 2005-2018, 2002
4332002
Searching for patterns in genomic data
M Dsouza, N Larsen, R Overbeek
Trends in Genetics 13 (12), 497–498, 1997
3601997
From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways
SY Gerdes, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, ...
Journal of Bacteriology 184 (16), 4555-4572, 2002
3352002
The ERGO TM genome analysis and discovery system
R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ...
Nucleic acids research 31 (1), 164-171, 2003
2882003
Use of contiguity on the chromosome to predict functional coupling
R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev
In Silico Biology 1 (2), 93-108, 1999
2101999
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains
A Bhattacharyya, S Stilwagen, N Ivanova, M D'Souza, A Bernal, A Lykidis, ...
Proceedings of the National Academy of Sciences 99 (19), 12403-12408, 2002
1482002
Skyport-container-based execution environment management for multi-cloud scientific workflows
W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ...
2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014
1312014
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance
G Pesole, S Liuni, M D’Souza
Bioinformatics 16 (5), 439-450, 2000
1062000
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights
A Bhattacharyya, S Stilwagen, G Reznik, H Feil, WS Feil, I Anderson, ...
Genome research 12 (10), 1556-1563, 2002
1052002
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis
I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ...
FEMS Microbiology Letters 250 (2), 175-184, 2005
1002005
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE
KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ...
PLoS computational biology 8 (6), e1002541, 2012
962012
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE
KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ...
PLoS computational biology 8 (6), e1002541, 2012
962012
Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586
V Kapatral, N Ivanova, I Anderson, G Reznik, A Bhattacharyya, ...
Genome research 13 (6a), 1180-1189, 2003
912003
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS computational biology 11 (1), e1004008, 2015
862015
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