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Rommel Ramos
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GIPSy: genomic island prediction software
SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ...
Journal of Biotechnology 232, 2-11, 2016
1312016
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains
SC Soares, A Silva, E Trost, J Blom, R Ramos, A Carneiro, A Ali, ...
PLoS One 8 (1), e53818, 2013
1272013
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains
JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ...
PloS one 6 (4), e18551, 2011
1182011
Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds
D Barh, N Barve, K Gupta, S Chandra, N Jain, S Tiwari, N Leon-Sicairos, ...
PloS one 8 (1), e52773, 2013
1062013
Inside the pan-genome-methods and software overview
L Carlos Guimaraes, L Benevides de Jesus, M Vinicius Canario Viana, ...
Current genomics 16 (4), 245-252, 2015
1052015
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
FA Araujo, D Barh, A Silva, L Guimarães, RTJ Ramos
Scientific reports 8 (1), 1794, 2018
972018
PIPS: Pathogenicity Island Prediction Software
SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ...
PloS one 7 (2), e30848, 2012
892012
High-throughput sequencing of black pepper root transcriptome
SMC Gordo, DG Pinheiro, ECO Moreira, SM Rodrigues, MC Poltronieri, ...
BMC plant biology 12, 1-9, 2012
772012
Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis
A Silva, MPC Schneider, L Cerdeira, MS Barbosa, RTJ Ramos, ...
Journal of bacteriology 193 (1), 323-324, 2011
692011
Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets
A Ali, SC Soares, AR Santos, LC Guimarães, E Barbosa, SS Almeida, ...
Gene 508 (2), 145-156, 2012
682012
Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of …
A Ali, A Naz, SC Soares, M Bakhtiar, S Tiwari, SS Hassan, F Hanan, ...
BioMed research international 2015, 2015
652015
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica
AR Carneiro, RTJ Ramos, H Dall'Agnol, AC Pinto, S de Castro Soares, ...
Journal of bacteriology 194 (23), 6689-6690, 2012
652012
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production
SC Soares, E Trost, RTJ Ramos, AR Carneiro, AR Santos, AC Pinto, ...
Journal of biotechnology 167 (2), 135-141, 2013
632013
Jazigos Filonianos Hidrotermais e Aplitopegmatíticos Espacialmente Associados a Granitos (Norte de Portugal).
F Noronha, MA Ribeiro, A Almeida, A Dória, A Guedes, A Lima, ...
Geologia de Portugal, 2013
602013
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses
AC Pinto, PHCG de Sá, RTJ Ramos, S Barbosa, HPM Barbosa, ...
BMC genomics 15, 1-14, 2014
552014
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
LT Cerdeira, AR Carneiro, RTJ Ramos, SS de Almeida, MPC Schneider, ...
Journal of microbiological methods 86 (2), 218-223, 2011
512011
Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory
AR Carneiro, ACR Cruz, M Vallinoto, DV Melo, RTJ Ramos, ...
Memorias do Instituto Oswaldo Cruz 107, 805-812, 2012
442012
Performance comparison of deep learning autoencoders for cancer subtype detection using multi-omics data
EF Franco, P Rana, A Cruz, VV Calderon, V Azevedo, RTJ Ramos, ...
Cancers 13 (9), 2013, 2021
412021
The Detection and Sequencing of a Broad-Host-Range Conjugative IncP-1β Plasmid in an Epidemic Strain of Mycobacterium abscessus subsp. bolletii
SC Leao, CK Matsumoto, A Carneiro, RT Ramos, CL Nogueira, ...
PLoS One 8 (4), e60746, 2013
412013
Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology
CL Araújo, J Alves, W Nogueira, LC Pereira, AC Gomide, R Ramos, ...
Gene 702, 36-45, 2019
382019
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Articles 1–20