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Jacob D Washburn
Jacob D Washburn
USDA-ARS
Verified email at usda.gov
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Cited by
Year
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower
PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ...
The Plant Cell 29 (9), 2150-2167, 2017
2302017
Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence
JD Washburn, MK Mejia-Guerra, G Ramstein, KA Kremling, R Valluru, ...
Proceedings of the National Academy of Sciences 116 (12), 5542-5549, 2019
1392019
Phylogeny and photosynthesis of the grass tribe Paniceae
JD Washburn, JC Schnable, G Davidse, JC Pires
American journal of botany 102 (9), 1493-1505, 2015
532015
Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales
D Mayfield-Jones, JD Washburn, T Arias, PP Edger, JC Pires, GC Conant
Seminars in cell & developmental biology 24 (4), 320-331, 2013
472013
Polyploids as a “model system” for the study of heterosis
JD Washburn, JA Birchler
Plant reproduction 27, 1-5, 2014
462014
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales
ME Mabry, JM Brose, PD Blischak, B Sutherland, WT Dismukes, ...
American journal of botany 107 (8), 1148-1164, 2020
402020
Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models
JD Washburn, MB Burch, JAV Franco
Crop Science 60 (2), 622-638, 2020
402020
Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor× S. propinquum population
JD Washburn, SC Murray, BL Burson, RR Klein, RW Jessup
Molecular Breeding 31, 153-162, 2013
382013
Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology
Jacob D. Washburn, Kevin A. Bird, Gavin C. Conant, J. Chris Pires
International Journal of Plant Sciences, 2016
372016
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses
JD Washburn, JC Schnable, GC Conant, TP Brutnell, Y Shao, Y Zhang, ...
Scientific Reports 7 (13528), 2017
362017
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Y Hao, ME Mabry, PP Edger, M Freeling, C Zheng, L Jin, R VanBuren, ...
Genome research 31 (5), 799-810, 2021
232021
Predicting phenotypes from genetic, environment, management, and historical data using CNNs
JD Washburn, E Cimen, G Ramstein, T Reeves, P O’Briant, G McLean, ...
Theoretical and Applied Genetics 134 (12), 3997-4011, 2021
202021
Estimation of Rhizome Composition and Overwintering Ability in Perennial Sorghum spp. Using Near-Infrared Spectroscopy (NIRS)
JD Washburn, DK Whitmire, SC Murray, BL Burson, TA Wickersham, ...
Bioenergy Research 6, 822-829, 2013
152013
Registration of Perennial Sorghum bicolor × S. propinquum Line PSH12TX09
RW Jessup, RR Klein, BL Burson, SC Murray, JD Washburn, JJ Heitholt, ...
Journal of Plant Registrations 11 (1), 76-79, 2017
122017
Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived
Y Hao, JD Washburn, J Rosenthal, B Nielsen, E Lyons, PP Edger, ...
Genome Biology and Evolution 10 (3), 999-1011, 2018
112018
Yield prediction through integration of genetic, environment, and management data through deep learning
DR Kick, JG Wallace, JC Schnable, JM Kolkman, B Alaca, TM Beissinger, ...
G3: Genes, Genomes, Genetics 13 (4), jkad006, 2023
92023
Progressive heterosis in genetically defined tetraploid maize
JD Washburn, MJ McElfresh, JA Birchler
Journal of genetics and genomics 46 (8), 389-396, 2019
92019
Location of low copy genes in chromosomes of Brachiaria spp.
TF Nani, JC Schnable, JD Washburn, P Albert, WA Pereira, FS Sobrinho, ...
Molecular biology reports 45, 109-118, 2018
82018
Targeted mapping of QTL regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor× S. propinquum population
JD Washburn, SC Murray, BL Burson, RR Klein, RW Jessup
Molecular Breeding 31 (1), 153-162, 2013
72013
Enhancing the resilience of plant systems to climate change
DM Braun, JD Washburn, JD Wood
Journal of Experimental Botany 74 (9), 2787-2789, 2023
52023
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