| Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9 JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ... Nature biotechnology 34 (2), 184-191, 2016 | 3154 | 2016 |
| Gaussian Processes for Big Data J Hensman, N Fusi, ND Lawrence Uncertainty in Artificial Intelligence, 2013 | 1246 | 2013 |
| Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ... Nature biotechnology 36 (2), 179-189, 2018 | 238 | 2018 |
| Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs J Listgarten, M Weinstein, BP Kleinstiver, AA Sousa, JK Joung, J Crawford, ... Nature biomedical engineering 2 (1), 38-47, 2018 | 233 | 2018 |
| Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and … A Brockington, K Ning, PR Heath, E Wood, J Kirby, N Fusi, N Lawrence, ... Acta neuropathologica 125, 95-109, 2013 | 156 | 2013 |
| Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies N Fusi, O Stegle, ND Lawrence PLoS computational biology 8 (1), e1002330, 2012 | 148 | 2012 |
| A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ... elife 2, e01123, 2013 | 128 | 2013 |
| Probabilistic matrix factorization for automated machine learning N Fusi, R Sheth, M Elibol Advances in neural information processing systems 31, 2018 | 124 | 2018 |
| Impact of pre-adapted HIV transmission JM Carlson, VY Du, N Pfeifer, A Bansal, VYF Tan, K Power, CJ Brumme, ... Nature medicine 22 (6), 606-613, 2016 | 104 | 2016 |
| Gaussian process prior variational autoencoders FP Casale, A Dalca, L Saglietti, J Listgarten, N Fusi Advances in neural information processing systems 31, 2018 | 94 | 2018 |
| Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis G Nardo, R Iennaco, N Fusi, PR Heath, M Marino, MC Trolese, ... Brain 136 (11), 3305-3332, 2013 | 90 | 2013 |
| Geometric dataset distances via optimal transport D Alvarez-Melis, N Fusi Advances in Neural Information Processing Systems 33, 21428-21439, 2020 | 87 | 2020 |
| Further Improvements to Linear Mixed Models for Genome-Wide Association Studies C Widmer, C Lippert, O Weissbrod, N Fusi, C Kadie, R Davidson, ... Scientific Reports 4, 2014 | 81 | 2014 |
| Probabilistic neural architecture search FP Casale, J Gordon, N Fusi arXiv preprint arXiv:1902.05116, 2019 | 75 | 2019 |
| Warped linear mixed models for the genetic analysis of transformed phenotypes N Fusi, C Lippert, ND Lawrence, O Stegle Nature communications 5 (1), 4890, 2014 | 59 | 2014 |
| In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency N Fusi, I Smith, J Doench, J Listgarten BioRxiv, 021568, 2015 | 47 | 2015 |
| Convolutions are competitive with transformers for protein sequence pretraining KK Yang, N Fusi, AX Lu bioRxiv, 2022.05. 19.492714, 2022 | 24 | 2022 |
| Teacher-student compression with generative adversarial networks R Liu, N Fusi, L Mackey arXiv preprint arXiv:1812.02271, 2018 | 21* | 2018 |
| Initialization and regularization of factorized neural layers M Khodak, N Tenenholtz, L Mackey, N Fusi arXiv preprint arXiv:2105.01029, 2021 | 18 | 2021 |
| Detecting regulatory gene–environment interactions with unmeasured environmental factors N Fusi, C Lippert, K Borgwardt, ND Lawrence, O Stegle Bioinformatics 29 (11), 1382-1389, 2013 | 16 | 2013 |
Jennifer ListgartenProfessor, UC Berkeley EECS and Center for Computational BiologyVerified email at berkeley.edu
