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Jian Peng
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Template-based protein structure modeling using the RaptorX web server
M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu, J Xu
Nature protocols 7 (8), 1511-1522, 2012
16742012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
6592014
Protein secondary structure prediction using deep convolutional neural fields
S Wang, J Peng, J Ma, J Xu
Scientific reports 6 (1), 1-11, 2016
5442016
A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information
Y Luo, X Zhao, J Zhou, J Yang, Y Zhang, W Kuang, J Peng, L Chen, ...
Nature communications 8 (1), 573, 2017
4922017
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
4602015
RaptorX: exploiting structure information for protein alignment by statistical inference
J Peng, J Xu
Proteins: Structure, Function, and Bioinformatics 79 (S10), 161-171, 2011
4032011
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways
M Taipale, G Tucker, J Peng, I Krykbaeva, ZY Lin, B Larsen, H Choi, ...
Cell 158 (2), 434-448, 2014
3822014
Variational Inference for Crowdsourcing
Q Liu, J Peng, A Ihler
Advances in Neural Information Processing Systems 25, 701-709, 2012
3812012
Computational solutions for omics data
B Berger, J Peng, M Singh
Nature reviews genetics 14 (5), 333-346, 2013
3722013
Empower sequence labeling with task-aware neural language model
L Liu, J Shang, X Ren, F Xu, H Gui, J Peng, J Han
Proceedings of the AAAI Conference on Artificial Intelligence 32 (1), 2018
3542018
A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach
Y Cai, K Guan, J Peng, S Wang, C Seifert, B Wardlow, Z Li
Remote sensing of environment 210, 35-47, 2018
3332018
Integrating satellite and climate data to predict wheat yield in Australia using machine learning approaches
Y Cai, K Guan, D Lobell, AB Potgieter, S Wang, J Peng, T Xu, S Asseng, ...
Agricultural and forest meteorology 274, 144-159, 2019
2692019
A community computational challenge to predict the activity of pairs of compounds
M Bansal, et al
Nature Biotechnology, 2014
2612014
Selection bias at the heterosexual HIV-1 transmission bottleneck
JM Carlson, M Schaefer, DC Monaco, R Batorsky, DT Claiborne, J Prince, ...
Science 345 (6193), 1254031, 2014
2582014
Conditional neural fields
J Peng, L Bo, J Xu
NIPS 2009, 2009
2232009
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
2072019
Compact integration of multi-network topology for functional analysis of genes
H Cho, B Berger, J Peng
Cell systems 3 (6), 540-548. e5, 2016
1922016
Protein structure alignment beyond spatial proximity
S Wang, J Ma, J Peng, J Xu
Scientific reports 3 (1), 1-7, 2013
1762013
Meta-path guided embedding for similarity search in large-scale heterogeneous information networks
J Shang, M Qu, J Liu, LM Kaplan, J Han, J Peng
arXiv preprint arXiv:1610.09769, 2016
1602016
Protein 8-class secondary structure prediction using conditional neural fields
Z Wang, F Zhao, J Peng, J Xu
2010 IEEE International conference on bioinformatics and biomedicine (BIBM …, 2010
1582010
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